KEGG   Salvelinus fontinalis (brook trout): 129862847
Entry
129862847         CDS       T11136                                 
Symbol
skic8
Name
(RefSeq) SKI8 subunit of superkiller complex protein isoform X1
  KO
K12602  WD repeat-containing protein 61
Organism
sfon  Salvelinus fontinalis (brook trout)
Pathway
sfon03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sfon00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    129862847 (skic8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sfon03019]
    129862847 (skic8)
Messenger RNA biogenesis [BR:sfon03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     129862847 (skic8)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_CDC20-Fz Beta-prop_WDR90_POC16_2nd WD40_Gbeta WDR55 Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_EML Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_Aladin Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_ACSF4 Beta-prop_Vps41 Beta-prop_WDR35_TULP_N Beta-prop_EIPR1 eIF2A Beta-prop_NWD2_C WD40_RFWD3 Beta-prop_WDR41 Beta-prop_VPS8 Ge1_WD40 Tricorn_2nd Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_HPS5 NBCH_WD40 Cytochrom_D1 PROPPIN Beta-prop_DCAF12 Beta-prop_NUP159_NUP214 WDR54 WD40_like VPS8_N Beta-prop_IFT122_2nd DUF2415
Other DBs
NCBI-GeneID: 129862847
NCBI-ProteinID: XP_055790872
LinkDB
Position
9:complement(53539302..53564964)
AA seq 335 aa
MHHNVGYQPPINPTEEEEQRFEVGCFVISTLALEYSILFKQEHAHDDAIWTAAWGRSERD
GLETIVTGSLDDMVKVWKWSDEKLELQWTLEGHQLGIVSVDVSPNGAIAASSSLDAHIRL
WDLEFGKQIKSMDAGPVDAWTVAFSPDSKYIATGSHLGKVNIFGVESGKKEYSLDTRGKF
ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD
DGYIKIYDVQHAKLAGTLSGHASWVLNVAFSPDDTHFVSSSSDKSVKVWDASSRVCVNTF
FDHQDQVWSVKYNGTGSKIVSVGDDRAIHIYDCPM
NT seq 1008 nt   +upstreamnt  +downstreamnt
atgcaccataacgttggataccaaccgccgataaaccccaccgaagaagaagaacagcgc
ttcgaagttggttgcttcgtgatttcgacgcttgccttggagtacagtattctgttcaag
caagaacatgcccacgacgatgccatctggactgctgcgtggggtagaagtgagcgggat
ggattggagacaatagtcactggctctctggacgacatggtgaaagtctggaaatggtca
gacgaaaagctggagctgcagtggaccctggagggccaccagctgggtatagtctcagtg
gacgtcagtcccaacggagccatagcagcctccagctcgctggatgcccacatacgcctc
tgggaccttgagttcggcaagcagatcaagtccatggatgcgggcccagttgatgcatgg
acagtagccttctccccagactccaaatatattgccacaggaagccatcttggaaaggtc
aacatctttggggttgaaagcggcaagaaggagtactctttggacaccagagggaaattc
atactgagtatagcctacagtccagatggaaagtacttggccagtggagctatagatgga
atcattaacatctttgacattgccactgggaaactactccatacgctggaaggtcacgcc
atgcctatcagatcgctgacgttctctccagactcacagctcttagtcacagcctcagat
gatggctacatcaagatttatgacgtgcagcatgccaagttggcaggcactctgagtggc
cacgcgtcctgggtcctcaacgtagctttctcccctgacgacacgcattttgtgtccagt
tcctcagacaagagtgtaaaggtttgggacgccagctccagggtgtgtgtcaacacattc
ttcgaccatcaggaccaggtgtggagtgtgaaatacaacggcacaggttctaagatcgta
tctgttggagatgaccgggccatccatatctatgattgtcccatgtga

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