Salvelinus fontinalis (brook trout): 129863371
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Entry
129863371 CDS
T11136
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129863371
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129863371
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
129863371
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
129863371
NCBI-ProteinID:
XP_055791286
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Position
10:2834633..2846820
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AA seq
527 aa
AA seq
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MATELTISESAVPLSEPHQVEDEEHWLYGGENIKKQNVPEGLPGPGDSLQLTSMGNTEEK
DAASQEAKGTEGEEEEDSDSDDDDVKVTIGNIKTGAPSYMGTGMNLSLKPARGYASAAAI
KLQPKGIDIETLGAFNGAPVVEVEMDIFEDKPWRKPGADLSDYFNYSFNEETWKGYCERQ
RRLQLGLEPSAPLSFENKITVQQGRATTLEKDTEPPSIKPDYKPDFPPASVLALAANRLK
AGPPPNRKLGGTIDVIGGQTGAIRRVEGRRREMQEQNPIQVLGDHGNKVQPLVPPAGPPP
PLPMGMPPPHFLHPPPPVSGMPPPLHPPGIPPPSITGLFLPPLAPPPTLMMPPVDGSRAP
LPFGYNSGESSFISYPPVSSSHMPWGSVLEKGGGDRGRGHWEYQGSHRERERERDQERDH
TPTTSEYNEDDRYHYYSHDRESEREFEHSYLHVHDSSGRRSREREEHQRDRRHRDKEESG
KHKSSKRKQHDDEGEGHRRHKHKKSKRSKEDKDVPEDMLGRGEEHKD
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atggctactgagttgaccatttcagaatcagcagtcccgttgagtgagccccatcaggtt
gaagacgaagaacattggctgtatgggggggaaaacatcaagaaacaaaatgtccccgag
ggtttgccggggcctggtgactcccttcagctgacttcaatgggcaataccgaagagaag
gatgctgcatcacaggaagccaaaggtactgaaggtgaagaggaggaggacagtgacagt
gatgacgatgacgtcaaggtcaccattggtaacatcaaaactggtgcaccttcctacatg
ggaacgggcatgaacctgagcttgaaaccagctcgtggctatgcctcagcagcagccatt
aagctacagcccaaagggatagatatagagacactaggggccttcaatggtgcaccagtt
gtggaggtggaaatggacatctttgaggacaaaccatggagaaagccaggtgccgacctc
tcagactacttcaactatagttttaatgaggaaacgtggaagggatattgtgagagacag
cgcagactacagcttggcctggagcccagtgctcctctcagttttgaaaacaagataaca
gttcagcagggaagggcaaccactttagaaaaggataccgaaccgccttccatcaagcct
gattacaagccagattttccccctgcttcagtcctggccctcgccgccaacagactgaag
gcaggacccccacctaacaggaaattgggtggaactattgatgtgattggtggacagaca
ggagccattcgccgggttgaaggccgaaggagggaaatgcaggaacagaatcctatccag
gtgctcggagaccatggtaacaaggtacaacccttggttccaccagcaggacctccccct
cctcttccaatgggtatgcccccaccacacttcctgcatcctcctccaccagtatctggt
atgcccccacctcttcaccccccaggtatacccccaccttccattacaggcctgttccta
cctccccttgctcctccccctaccttgatgatgccacctgtggatggcagtagagcccct
cttccttttggatacaacagtggagagtcaagcttcattagctaccctccagtctcatca
tcacacatgccttggggctctgtgctggagaagggggggggagacagaggacgagggcat
tgggagtaccaaggaagtcatagagaaagagagagagaaagggatcaagagagagatcat
actccaaccaccagcgaatataatgaggatgaccgttaccactactacagccatgatcga
gagagtgagcgagaatttgagcacagttaccttcatgttcatgacagcagcggtaggcgt
agcagggagagggaggagcatcagcgagacagacgccatcgtgacaaggaggagagtggt
aaacacaagtcttccaaacgcaagcagcatgatgatgagggggaggggcatcgcagacac
aagcacaagaaaagcaaacgcagcaaagaagacaaggatgtcccagaggatatgttgggg
cgtggggaagagcacaaggactga
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