Salvelinus fontinalis (brook trout): 129863422
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Entry
129863422 CDS
T11136
Symbol
sympk
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03015
mRNA surveillance pathway
sfon04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129863422 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
129863422 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfon03021
]
129863422 (sympk)
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129863422 (sympk)
Transcription machinery [BR:
sfon03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129863422 (sympk)
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
129863422 (sympk)
U7-dependent histone pre-mRNA processing factors
129863422 (sympk)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
HEAT_MROH2B_C
Adaptin_N
Cnd1
Motif
Other DBs
NCBI-GeneID:
129863422
NCBI-ProteinID:
XP_055791373
LinkDB
All DBs
Position
10:3942206..3954946
Genome browser
AA seq
1267 aa
AA seq
DB search
MNNKGSNKKMASNNGESAGVRTSVASQFFNEDEDTAIVDMTTSEKVVDLLNQAALIATDS
KLTVLKQVQELIINKDPSLLDNFLDEIIAFQTDKSMEVRKFVIGFIEEACKRDNELLLKL
IANLNMLLKDDSVNVVKKAILTLTQLYKVALQWFVRSKTMSDMQEACWDMVTQMKEEVLA
MLEVDNDGVRTHAIKFTESLIITLSPRTSDSDTPKRQEGDISLDKISKDHAYIRYDTLCG
EGKSALEQLLKFMVHPAISSINLTTALGSLATLARQRPMFMSEVVQAYETLHANLPPTLA
KSQVSSVRKNLKLHLMAVLKHPCSLEFQGQISTLLLDLGMSQNEITRNTPAPREPRKRPR
HEPYTEGKKLKIEPALIEDDEDKEEPAPPSISKPSSVPVAQSAIDLTAEFLRPLLSPENV
ANLVLISMVYLPDVMPASFQATYTPVESAGTDAQIKHLARMMATQMTAAGVGPGLEQCKA
RDEKAGKEEGMDEGIGESSKDLLIKRKVPVMGQAISVVGGGYGDKSQTETGEAPQVKRLP
EPILPSTQIKTPGASGKRKVFRLADVIQPLTDTQLEKLTNMAVKRILHSEKAIAQSGMAH
VRVKLLSRLVTQFEGMMKDDVLEFILEDIRTRSDLAFSLLYQEYNTYLSQQPTGLLDSYD
HCLFTLLSGLQEKPEQRDGLFTKIVLEAPLITESALEVIRRYCEDESRVYLGMTTLKELI
IKRPSRQFQYLHVLLDLSSHEKEKVRSNALSFIKRMYEKDQLRDYIEKFALNYMQLLVHP
NPPSLLFGADKDTEVASPWTEDTVRQCLYLYLSLLPLNHRLVHELASVYTEAIADIKRSV
LRVIEQPIRGMGMKSPQLLLLVENCPKGAETLVTRCLHILTDKVPPSPELVERVRDLYHK
RVPDVRFLIPVINGLEKKEVTQALPKLIKLNPIVVKEVFNRLLGTQHSEGSSSMSPLTPG
ELLISLHNVDSTKCDMKSIIKATNLCFGEKNVYTSEVLAVVMQQLMEQSPLPILLMRTVI
QSLSMYPRLGGFVMNILSRLIVKQVWKYPKVWEGFVKCCQRTKPQSYSVLLQLPPAQLTS
VFERCPEMREPLLQHVHSFTPHQQAHIPASIMTVLEANSKQPEPEAMQPVVLERQVETPV
ATIAPNVTFAPVATFAPVATPPVRAEPIPVPLRDPEPAVQQHLPNKKEEEEPMEEGETAP
ASQEETADTTLQVDLPVVEENPTPDPIETVEDPMEEAPTEPSDVTDQLKDVTEDSTAEPE
TGTGDAE
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atgaataataaaggatctaataagaagatggcctcaaataacggagaaagtgctggtgtg
aggaccagtgtggcatcacagtttttcaatgaagacgaggacacggctattgtcgatatg
accaccagtgaaaaggttgttgatctcctgaaccaagcagctcttattgctacagacagc
aaactcacggttctcaaacaggtccaggaactgatcatcaacaaggacccctctttactt
gacaatttcttagatgagatcatagcctttcagacagataagtcaatggaagtaagaaag
tttgtcattggctttattgaggaagcatgtaagagggacaacgagctcctgcttaaactg
attgccaacctgaacatgctgctgaaggacgacagtgtcaatgtggtgaagaaggctatc
ctcacactcactcagctctacaaagtggcgctgcagtggtttgtgcgttccaagaccatg
tcagacatgcaggaagcatgctgggacatggtgactcagatgaaggaggaagttctggct
atgctggaagttgacaatgatggagtccgcactcatgctatcaagttcacagagtctctc
atcatcactctttcaccgaggacgtcagactcagacactcccaagcgccaagagggagac
atcagcctggataaaatctccaaagaccatgcctatatccgctacgataccctgtgtggg
gagggcaagtctgcgctggagcagcttctgaagttcatggtccaccctgctatctccagc
atcaacctgaccacagccctgggttccctggccacactggcccgacagaggcctatgttt
atgtctgaagtggtccaggcttatgagactctgcatgccaacctacccccaacgctggcc
aagtctcaggtgagcagtgtacgcaagaatctgaagttacacctgatggcagtgctcaag
cacccctgcagcctggagttccagggccaaatcagcactctgctcctagacctggggatg
tcccagaatgaaataacccgcaacacgccagccccacgtgaaccgcgcaaaaggccccgc
catgagccatacacagagggcaaaaagctcaagattgagcccgctcttatagaagatgat
gaagataaagaagagccagcccccccttccatctccaagccctcctctgtgccagtagcc
cagtcagccatcgacctcactgcagagttcttgcgccccctgctctccccagagaacgtg
gccaatctggttctaatcagcatggtgtacttgcctgatgtcatgccagcatccttccag
gccacatacacaccagtggagtctgcaggaacagatgcccaaatcaaacacttggccaga
atgatggccactcagatgacagcagctggagttggaccaggactggagcagtgcaaagca
agagatgagaaagctggaaaggaggagggcatggatgaaggcataggggagtcctccaaa
gacctgctcatcaagcgtaaagtaccagttatgggccaagccatctctgtggttggagga
ggctatggagataagagccaaactgaaacgggggaagccccccaggtcaagaggctgcct
gagcccatcctcccctccacacagatcaaaacacctggtgcaagtgggaagaggaaagtg
ttcagattagctgatgtgatccagcctttgacagacacccagcttgaaaagttgaccaac
atggccgtcaagcgcatcctgcactcagaaaaagctatagcacagagtgggatggcccat
gtgcgcgtgaagctgctgtccagacttgtgactcagtttgaggggatgatgaaggatgat
gtgctggagttcattctggaggacattaggaccaggagcgacctggccttctctcttctc
taccaggagtacaacacatacctcagtcagcagcccactggcttgttggacagctacgac
cactgtctcttcactctactgtccggcctgcaggagaagcccgagcagagggatgggctt
ttcacaaagattgtgctggaggctccgttaatcacagaatctgctttggaagtaatacga
cggtactgtgaagatgagtcgcgggtgtacctcggcatgactactctaaaagagctgatt
ataaaacggccctcaaggcagttccagtacctccacgtgcttctggatctcagctcacat
gaaaaggagaaggtgcgctccaatgccctgtccttcataaagcggatgtatgagaaagac
caactgagggactatattgagaagtttgcactgaactacatgcagcttctcgtacaccct
aatcctccgtcgttactttttggggctgacaaggatacagaggtggcctccccctggaca
gaggacacagtgaggcagtgtctgtacctctacctgtcccttctgcctctcaaccaccgc
ctggttcatgagctggcctctgtctacactgaagccattgctgacatcaagcgcagtgtg
cttcgagtgatagagcagccaatccgtggaatgggaatgaagtctccacagcttctgctg
ttggttgaaaactgtcctaaaggagcagagactctggtcactcgctgcctgcatattctc
actgataaagtgcctccgtcaccagagttggtggagagagtgagggacctgtatcacaaa
cgagtgcccgacgttcgtttcctaattcctgtcatcaacggcctggaaaagaaagaggtg
acccaggctcttcccaagcttatcaagctcaaccccattgtggtgaaggaagtcttcaac
cgtctcctgggcacccagcatagcgagggtagttcctcaatgtctcctctcacccctggc
gagcttctaatttctttacacaatgttgactcaacaaagtgtgacatgaagtccatcata
aaagccaccaacctgtgttttggggagaagaatgtgtacacgtcagaggtcctggctgtg
gtaatgcagcagctgatggagcagagtcctctccccattctgctgatgagaacagttatc
cagtccctcagcatgtacccccgcctgggaggcttcgttatgaacatcctgtcccgactc
attgtcaagcaggtgtggaagtatcctaaggtgtgggagggctttgtgaagtgctgccag
aggaccaagccgcagtcctacagcgtgctgctgcagctcccaccagctcagcttaccagt
gtgtttgagcgctgcccggagatgagggaacctcttctacagcatgtccactctttcacc
ccccaccagcaagcccacattcccgcctccatcatgacagtcctggaggccaacagcaag
cagccagaaccagaggccatgcagcctgtagtattggagagacaggttgagacacctgtt
gcaaccatcgcacccaatgtaaccttcgcacctgttgcaaccttcgcacctgttgcaacc
cctccagtacgggcagaacctattccagtaccactgagagatccagagccagcagtccag
cagcatctgccaaataaaaaagaagaagaggaacccatggaggaaggagagacggccccc
gctagtcaagaggaaactgcagacaccactttgcaggtggatttgccagtagtggaagaa
aaccccactccggatcctatagagacagtggaagacccaatggaggaggcacctactgaa
ccttcagatgtcactgaccaattaaaagatgtcaccgaagacagtaccgcagaacctgag
actggcacaggagatgcagaatga
DBGET
integrated database retrieval system
