KEGG   Salvelinus fontinalis (brook trout): 129863627
Entry
129863627         CDS       T11136                                 
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-like isoform X1
  KO
K11648  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
sfon  Salvelinus fontinalis (brook trout)
Pathway
sfon03082  ATP-dependent chromatin remodeling
sfon03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:sfon00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    129863627
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    129863627
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:sfon01009]
    129863627
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sfon03021]
    129863627
   03036 Chromosome and associated proteins [BR:sfon03036]
    129863627
Protein phosphatases and associated proteins [BR:sfon01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     129863627
Transcription machinery [BR:sfon03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     129863627
    SWI/SNF complex
     129863627
Chromosome and associated proteins [BR:sfon03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    129863627
   PBAF complex
    129863627
   SWI/SNF complex
    129863627
SSDB
Motif
Pfam: SNF5 INI1_DNA-bd
Other DBs
NCBI-GeneID: 129863627
NCBI-ProteinID: XP_055791723
LinkDB
Position
10:complement(11957493..11976634)
AA seq 366 aa
MALSKTFGQKPIKLQLEQDGDFYMVGSEVGNYLRMFRGSLYKRYPSLWRRLASVEERKKI
VASSHATSVTLLKASECEEIFEGNDEKYKAVSISTELPAYLREQKAKRSSQWVPTLPNSS
HHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQAEVLVPIRLDMEIDGQK
LRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDSILDEQTD
QRVIIKLNIHVGNISLVDQFEWDMSERENSPETFALMLCSELGLGGEFVTTIAYSIRGQL
SWHQRTYAFSENPLPTVEIAIRHTGDADTWCPLLETLTDAEMEKKIRDQDRNTRRMRRLA
NTAPAW
NT seq 1101 nt   +upstreamnt  +downstreamnt
atggcgttaagcaaaacctttggccagaagccgattaaattgcagctagagcaagatgga
gacttctacatggttggatcagaggttggaaactacctccgtatgttcaggggctctctg
tataaaaggtacccatcactctggaggaggttagcctcagtagaggaaaggaagaagatt
gtagcatcatcacacgccacaagtgtgactctgctgaaggcgtccgaatgtgaagagatc
tttgaggggaatgatgagaagtacaaagcggtttccataagcacagagctaccagcgtac
ctcagggagcagaaggcgaagaggagcagccagtgggtacccacgctgcccaatagctcc
caccacctggacgctgtgccctgctccaccaccatcaaccgcaaccgcatgggccgcgac
aagaagaggaccttccccctgtgctttgacgaccacgacccggcggtgatccacgagaat
gcgtctcaggccgaggtgttggttcccattcgtctggacatggagattgacgggcagaag
cttcgagatgccttcacctggaacatgaatgagaagctgatgactccggagatgtttgct
gagatcctgtgtgacgacctggacctgaaccccctggcctttgtcccagccatcgcctca
gctatccgtcagcagatagagtcctaccccacagacagcatcctggatgaacagaccgac
cagagggtcatcatcaagctgaacatccacgttgggaacatctccctggtggaccagttt
gagtgggacatgtcggagagggagaactctccggagacgtttgccctgatgctgtgctcc
gagctgggcctgggaggagagtttgttactaccattgcctacagcatccgcggccagctc
agctggcaccagaggacgtacgccttcagtgagaaccccctgccaacggtggagattgcc
atccgccacacaggcgacgctgacacatggtgccctctgctggagaccctgacagatgca
gagatggagaagaagatcagggaccaggacaggaacaccaggcgaatgagacgacttgcc
aacactgcccccgcctggtag

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