Salvelinus fontinalis (brook trout): 129863982
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Entry
129863982 CDS
T11136
Name
(RefSeq) lys-63-specific deubiquitinase BRCC36 isoform X1
KO
K11864
BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03440
Homologous recombination
sfon04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
129863982
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
129863982
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sfon01002
]
129863982
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sfon04121
]
129863982
03036 Chromosome and associated proteins [BR:
sfon03036
]
129863982
03400 DNA repair and recombination proteins [BR:
sfon03400
]
129863982
Peptidases and inhibitors [BR:
sfon01002
]
Metallo peptidases
Family M67
129863982
Ubiquitin system [BR:
sfon04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
129863982
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
129863982
BRISC complex
129863982
Chromosome and associated proteins [BR:
sfon03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
BRISC complex
129863982
DNA repair and recombination proteins [BR:
sfon03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
129863982
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCC36_C
JAB
Prok-JAB
UPF0172
DUF7385
Motif
Other DBs
NCBI-GeneID:
129863982
NCBI-ProteinID:
XP_055792452
LinkDB
All DBs
Position
10:29835346..29882199
Genome browser
AA seq
296 aa
AA seq
DB search
MAVSAVHLESDAFLVCMNHALSTEKEEVMGLCIGEADTNRIVHIHSVIILRRSDKRKDRV
EISPEQLSSAATEAERLAEMTGRLMRVVGWYHSHPHITVWPSHVGKNQSTPLPHQFQNFS
FHCHGKLFQLVCLSHSFSTTDIRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQ
SVQAQKGSEYERIEIPIHVVPHEAIGKVCLESAVELPRILCQEEQDTYRKIHSLTHLDPI
TKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNRQSVIELQLEKERLTQELATM
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atggcagtgagcgcagttcacctcgaatcagatgcctttttggtttgcatgaatcatgca
ttaagtaccgagaaggaggaagtaatgggactctgcatcggagaggcagacaccaaccgc
atcgtccacattcattctgttattattctccgacgctcagacaagaggaaggatcgcgtg
gaaatctcgcctgagcagctatcttcagctgctaccgaagctgagagattggctgaaatg
actggacggctgatgcgtgtagttggttggtaccactctcacccccacatcactgtgtgg
ccatcacatgtgggtaagaaccagagcacccctctaccacatcagttccagaactttagt
tttcactgtcatggcaaactgtttcagttggtgtgtttgagtcattcattttctacaaca
gatataaggacacaggccatgtaccaaatgatggaccagggctttgttgggctgattttc
tcctgtttcattgaggataagaacacaaaaactggtcgagttctctacacctgcttccag
tctgtgcaagcccagaaaggctctgagtacgagagaatcgagatcccaattcatgtggtc
ccgcacgaggccattgggaaagtgtgccttgaatcagcagtggagctcccaagaatcctc
tgccaggaagagcaggatacctacagaaagattcacagcttaactcacctggatccgatc
acgaagatacacaatggctcagtgttcactaagaacctgtgtagtcagatgtctgctgtg
agtggtcccctgctgcagtggctggaggaccgtttggagcagaacagacagagcgtcatt
gagctgcagctggagaaggagagactaactcaggagcttgcaaccatgtga
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