Salvelinus fontinalis (brook trout): 129864070
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Entry
129864070 CDS
T11136
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X1
KO
K08524
retinoid X receptor alpha
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03320
PPAR signaling pathway
sfon04148
Efferocytosis
sfon04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
129864070
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
129864070
03320 PPAR signaling pathway
129864070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfon03000
]
129864070
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
sfon03310
]
129864070
Transcription factors [BR:
sfon03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
129864070
Nuclear receptors [BR:
sfon03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
129864070
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NCBI-GeneID:
129864070
NCBI-ProteinID:
XP_055792622
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Position
10:complement(34400996..34563521)
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AA seq
540 aa
AA seq
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METKPFMSLESTILPMGWFLKPQCSLAPPPQRGRSGEACSCFTGMCHLHHPRISTGNTQR
HLHIPSPSSPSWQTPHLGRHLYQINSSGQVTSSPLSSPTSHRGMHPSLLNPSSMGPSGSL
HSPISTLSSPMNGLGSPFSVINSPMGPHSMSSPGMGYGPSVSPQLNSQMNSVSSSEDIKP
PLGLNGVMKVSAQPSPGCMPLSLTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDL
TYTCRDNKDCLIDKRQRNRCQYCRYQKCLACGMKREVLLHTAVQEERQRAKERSENEVES
TSSVNEDMPVEKILEAELAVEPKTETYIETNLGMPSNSPNDPVTNICQAADKQLFTLVEW
AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGV
GAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEA
YCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaaacctttcatgtcattggaatctacaatcctgcctatgggatggttcctg
aagccccagtgctcgctggctccgcccccccagcgaggacgctcgggggaggcctgctcc
tgtttcaccggcatgtgtcacctccaccacccccggatatctacaggtaacactcaacgc
catctccacatcccctcgccatcttccccgtcatggcagactccgcacctgggaagacac
ctgtatcaaataaattcatcaggtcaggtgacctcatctccactgagctctcccacgtcc
caccggggcatgcacccatccctgctcaacccgtcctccatggggccctcaggctccttg
cactctccgatcagcaccctgagttctcccatgaatggcctgggctcgcccttttctgtc
atcaactcccccatgggcccacactccatgtcctcacccggcatgggctacggtcccagt
gtcagcccccagctgaactcccaaatgaactcggtcagcagctcggaggacatcaagccc
ccgctgggtctcaacggggtgatgaaggtgtccgcccagccctcgccggggtgcatgcct
ctctccctcaccaaacacatctgtgccatctgcggagaccgctcctcaggtaaacattat
ggagtgtacagctgtgagggctgtaaaggcttcttcaagaggacagtgaggaaggacctg
acctacacctgccgcgacaacaaggactgtctgatcgacaagcgccagcgcaaccgctgc
cagtactgtcgctaccagaagtgtctggcctgtggaatgaagagagaagttttgttacac
acagccgtccaggaggagcgccagcgggccaaagagcgcagtgagaacgaggtggagtcc
accagcagcgtcaacgaggacatgcccgtggagaagatcctggaggcagagctcgctgtg
gaacccaagacagagacctacatcgagaccaacctgggcatgccatccaactcgcccaat
gacccggtgactaacatctgccaagcagccgacaagcagctctttacactggtggagtgg
gccaagaggatcccccacttctctgagctgcccctggacgaccaggtcatcctcctacga
gcagggtggaatgagctactcatcgcatccttctcacaccgttcgatagcggtgaaagat
gggatcctcctagcaacagggctacacgtccatcgtaacagcgcccacagtgctggagtg
ggagccatctttgacagagtgctcacagaactggtgtccaagatgagagacatgcagatg
gataagacagagctggggtgccttcgagccatcgtcctcttcaacccagattctaaaggc
ttgtcaaacccaggcgaggtggaggctttgcgagagaaggtctacgcctctctggaggcc
tactgcaaacagaaatacccagatcagcctggcaggtttgccaagctgttgctgcggtta
ccagccctgcgttccattggtctgaagtgtctggagcacctgttctttttcaagctcatc
ggggacacgcccatcgacaccttcctcatggagatgctagaggcgccccatcaaatgaca
taa
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