Salvelinus fontinalis (brook trout): 129865260
Help
Entry
129865260 CDS
T11136
Name
(RefSeq) transcription intermediary factor 1-alpha-like
KO
K08881
tripartite motif-containing protein 24 [EC:
2.3.2.27
]
Organism
sfon Salvelinus fontinalis (brook trout)
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
sfon01001
]
129865260
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sfon04121
]
129865260
Enzymes [BR:
sfon01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129865260
Protein kinases [BR:
sfon01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
129865260
Ubiquitin system [BR:
sfon04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
129865260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
zf-B_box
ANCHR-like_BBOX
PHD
zf-RING_UBOX
zf-RING_5
zf-C3HC4_2
PHD-1st_NSD
PML_CC
zf-C3HC4
PRANC
ParB
DUF1351
Motif
Other DBs
NCBI-GeneID:
129865260
NCBI-ProteinID:
XP_055793864
LinkDB
All DBs
Position
11:complement(20265537..20288182)
Genome browser
AA seq
1159 aa
AA seq
DB search
MDESPEAAVDNDDLVIIVENEAESLPAEEERAKQLGGSIGLMDTCPVCKLNFHNREPKLL
PCLHSFCKKCLPPPSRNLVNTEQRRDPQLQVDNSKPLNVIRCPVCRQECWEVEVLDNFFV
KDSVEVPSSTVEKTSQVCMSCDDNTEATGFCVECVEFLCVTCIEAHQRVKFTRDHTIRQK
EEMSPEAVGASSQKPVFCDIHKQEPLKLFCETCDRLTCRDCQLLKHKDHNYQFLDDAYRN
HRQHLENMTHQLQEKRKAIEEVSNCINNGLQQVDENRKSVTNEIKKSICNLIMEINRKGK
ILVNQLETLTKDHEVGLKKQQEDVSHLTRHLDHVINFTKWATASHSGTALLYCKRLILCQ
IHYLMRANCNASIVPQSSVRFQCRSGFWASNVDLGSLAVERIPGRQPSSLQQGFPPGHPS
QPGPGPRGEGPPGAFPPGSSAHQRGSTLAQLQLQVEKLAQHPNRAGQPPPNHWSWYQQGL
KLPGPGGPPPQRPHQGGSPSQGPPNMVQIQQPGRSYGPPGPQTHPNPRSPTSMLQNAGFP
PQSLRDLIHNSSFPPKPMDVLQGTSRYSHAPPPNTGPISTQASIHQRNMMEAAQLRRSDP
SGASSSLSMPNPRASYAPSLATAFPDRHAQGRQNSPMSKSSSEANIGSASWKRTEPNAAA
PPSAKRRRRSSPGPIIVIKDEPEDDDEVSFVQSSVGASASLPDSSTGIQPKSQAQPQQQS
LPAPMLEPQLETQLETQLETQPETQPETQPETQPETQPETQPETQPETQVELEADPQPDP
EKATGVTEDDPNEDWCAVCQNGGELLCCDRCPKVFHLNCHIPTLRESPSGEWFCSFCRDL
TSPEMEYNPDSQGELPAMKEEPGSEGFPPVDKRKCERLLLCIYCNEFSTDFQEPASLSSI
PEYKELIETPMDLSIVKGRLESKESPRYCSAEEFVKDVRLIFRNCAKYYQADTEVGGAGL
SLEEYFEEQLKFLYQDRSFPGGREEGMIPPVEDEMEEGMEDDGMAPNEGDMPPVEDDLTP
VEEGMPSMEKEGTEEGMDPVEGEMEEEGIPPLEESMEEEETSPVKEDLPPCDATESVDPS
IRGASSPNLSSKEAPQPLSDTPDNPPCKEASQPLSDTPDKPPDSQGTSPADSQDTSPAAG
LATENEGTTEEVRDKAEEE
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atggatgagagcccagaagctgctgtagacaacgatgaccttgttattatagtggaaaac
gaggcagagagcttgccagctgaagaggagagggcgaaacagctaggaggtagcatcggt
ctcatggacacatgccctgtctgtaagttgaatttccacaatcgagagccgaaacttctg
ccatgcctccactctttctgcaagaagtgtcttccacccccttcaaggaacttagtcaac
actgaacaacgtcgcgacccacaacttcaagtggacaactcgaaaccactcaatgtgatc
cgctgcccagtttgtcgacaagagtgctgggaggtggaggtgctggataacttctttgtg
aaggactctgtggaggttcccagcagcacagtggagaagaccagtcaggtgtgtatgagt
tgtgatgacaacaccgaggccacagggttctgtgtggagtgtgtggagttcctgtgtgtg
acgtgcattgaggcccaccagagggtcaagttcaccagggatcataccatacggcagaag
gaggagatgtcaccagaggctgtgggtgcgtcctcacagaagccagtgttctgtgacatc
cacaagcaggagcccctcaaactgttctgtgagacctgtgaccgtctcacctgcagggac
tgtcagctgctcaagcacaaagaccacaattaccagttccttgacgacgcctacagaaac
cacaggcaacacctggaaaacatgacgcatcagctacaggagaagaggaaagccatagaa
gaagtgtccaattgcatcaacaatggactccagcaagtcgatgaaaaccgcaagtctgtc
accaatgagataaagaagtcaatttgcaacttgatcatggagatcaacagaaagggaaaa
atcttggtcaatcaacttgagacactgacgaaggaccatgaggtcggactaaagaaacaa
caagaagatgtcagccacctgaccagacatctagatcacgtcatcaacttcaccaagtgg
gccacagccagtcacagtggcacagctctcctgtactgcaagagactgattctttgccaa
atccattacctaatgagggccaactgtaacgcatccatcgtccctcagagctcagttcgc
ttccagtgtcgctccggtttctgggcctcaaatgtcgatcttggttctttggcagtagag
agaatccctggtcgtcagcccagttccttgcagcagggcttccctcctggccaccccagc
cagcctggccccggccccagaggagagggccctcccggggctttccctccaggctcctcc
gcccaccagcgtgggagcacccttgcccagctccagctgcaggtagagaagcttgcccag
caccccaacagggctggacagccccctcccaaccactggtcctggtaccagcagggtctg
aagctcccggggccagggggcccccctccacagaggccccaccaggggggttctccgtcg
caaggtccccccaacatggtccagatccagcagccgggccggagttacggaccccccggg
ccccaaacacatcccaaccccaggagccccacttctatgctgcaaaatgcaggattccct
ccgcagtctctgagggatctcatccacaactccagctttcctcccaaaccaatggatgtg
ttacagggtacctcccgctactctcatgcaccccctcccaacacaggacccatcagcact
caagcttctatacaccagcgtaacatgatggaagccgcacaactgaggaggagtgacccc
agtggagcttcatcatcattatccatgcccaaccccagagctagttatgcgccgagccta
gctactgccttcccagacagacatgcacaaggaagacagaattcccccatgtccaaatct
tcctctgaagccaacatagggtctgcttcctggaagcgcacagagcctaatgcggcggct
cccccctcagctaagcggaggcgaaggtcgtcccccggaccaatcatcgtcatcaaggac
gaaccagaggacgatgacgaagtcagctttgtgcagtctagtgttggagcctcagccagc
ctgccagacagcagtacaggcatccagcccaagtcccaggcccagccccagcagcaatct
ctcccagcacccatgttggagccccagctagagacccagctagagacccagctagagacc
cagccagagacccagccagagacccagccagagacccagccagagacccagccagagacc
cagccagagacccagccagagacccaggtagagctagaggcagacccccaaccagaccca
gaaaaggccacaggtgtcactgaagacgaccccaatgaagactggtgcgctgtgtgtcag
aacgggggagaactgctctgctgtgaccggtgtcccaaagtcttccatctgaactgtcat
atacctacacttagagagtctcccagtggtgagtggttctgttcgttctgtcgtgacctg
accagtcctgagatggagtataacccagatagccagggagaattgccagccatgaaggag
gagccaggatcagagggattcccgccagttgataaaaggaaatgtgagagactgttgctc
tgcatctactgcaacgagtttagtacagatttccaggagcctgcctcactgtcgtcaatc
ccagagtataaggagctgattgagactccaatggacctgtccatagtgaagggcaggctg
gaatctaaggagagcccgcgttactgcagtgctgaggagtttgtcaaggatgtcaggctc
atattcaggaactgtgcaaagtattaccaggcagacactgaggtgggaggtgcaggactg
agcctggaggagtactttgaggagcagctgaagttcctctaccaagacaggagcttccct
gggggcagagaggagggcatgataccccctgtggaggacgagatggaagaagggatggaa
gacgatgggatggctcctaacgaaggggatatgccccctgtcgaggacgacctaacgcct
gttgaagaagggatgccttctatggagaaagaaggaactgaagaggggatggatcctgtg
gaaggagagatggaggaagaagggatacctcctttagaagagagcatggaagaggaagag
acttctccagtgaaagaggacttaccaccttgtgatgctactgaatcagtagatccatca
ataaggggtgcatcatctcccaacctttccagcaaggaggctccccaacccctctcagat
actccagacaaccctccctgcaaggaggcttcccaacccctctcggataccccagacaaa
cctcctgactcccagggcaccagccctgctgactcccaggacaccagccctgctgcaggc
ttagccacagaaaatgaggggacgactgaagaagtgagagacaaagcagaagaggaatga
DBGET
integrated database retrieval system
