Salvelinus fontinalis (brook trout): 129865486
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Entry
129865486 CDS
T11136
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus-like isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03013
Nucleocytoplasmic transport
sfon03015
mRNA surveillance pathway
sfon03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129865486
09122 Translation
03013 Nucleocytoplasmic transport
129865486
03015 mRNA surveillance pathway
129865486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129865486
03041 Spliceosome [BR:
sfon03041
]
129865486
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
129865486
Spliceosome [BR:
sfon03041
]
Complex C
Other components
EJC/TREX
129865486
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
RRM_1
Motif
Other DBs
NCBI-GeneID:
129865486
NCBI-ProteinID:
XP_055794301
LinkDB
All DBs
Position
11:complement(30077716..30108428)
Genome browser
AA seq
1649 aa
AA seq
DB search
MADEDVTLNGKPLQSLRVADLKAALEQRCLPKSGAKNTLIKRLKGALMLENLQRTSTPHI
GLQPNSQIGEEMSQNSFIKQYLAQQQELLRQRLEREAREAAEADESPAGPEEEEHTEEGN
DSDSYNPDKHRPMPSQPPLTRAEEEGGGPMMMGHQGQGMMMGHQGQGMMMGKGQGMMSQG
MGQGMMSRRPDFGPGSVPQESSDAPGGPGSWMQQRPSLQHGLHHEEPTTPSPPRAVASLS
VRVLGDPERQGLPPSMPPRAQTQEKEGTAPADDDRPAHSVLHLSRSARAAAGSNSVQEDC
DDDDDSSEEDEDEWGPAARRGGGGGRGLAPPPQPQQPSPSIPAARERSRRKLQPPQHIPP
QQVVHQPPMQLRQPTPPPSPPPELSFPLPDTPKQSPPDMDEEPEGAGAGVSVRPPPGGLQ
RQDSDSSSRSSSPEPRAKRRPGPLSLLARKMASEGAYGKRGEGAPADGQTGPGGEASRPG
DGVGSSQGAGAGPGVEVVMFPGASITHTGGSSTGHTGFVTVPEVPAPVVMFGSGAQSHPL
PLLSVAAVPSLTLTTKPQCPSGETAQKKTEKETKQAEEKERKMKQVEKESHLPPWQRGRD
LTLPSASSQFGSGGSEEPVMDQGDTPKKSPFGRDKPLSSAPGSAMATTSSPPAITPKKPR
MFSDTSSGSMISPPKPVQQGSVVLTTPGELPEPHGVSEIPQVVLVSGAQQHTDDTMEVTA
LNKVSVEKPGWKAGGDDEKLEKERASLAEKERASLAEKERASLAEKERASLAEKERASLA
EKERACLAEKERACLAEKERACLAEKERACQAEKERACQAEKERACQAEKERACQAEKER
ACQAEKERACQAEKERASQAEKERASQAEKERASLAEKERASLAEKERASLAEKERASLA
EKERASLAEKERASLAEKERASQAEKERASQAEKGTSKPGETKRRGPEETVEVEPMGPVL
PPSYPGKGEDERKGKEDERRRRKEDERKKEAERGRRGERVRHRRSSPSSGGDSSSSDSGS
SSSRSSGSTSSRDKKKKTGTGKGDEKRRLYKGGEKKQSAREVKQSSLSEPSGPMEVERPD
PGQTQPTPVGDPQNSEGCMEESTTPKAFAARKISLTTGSKTSPEGGAAAAAGGEAESGTA
AGRKRRWGSSTAVNAKKPSISITTDSLKSLIPDIKPSQDAVVDLHPDDIQLSGDEDTTRE
DKGLKIRRTVTQVVPSENQENGQGEQDEEEEEKKQEHDREKTQKEKRKDSYSEDTMESQS
SATHDTDAKKVTPSDTLVRRSISQQKSGVSVTIDDPVRTAKQPSPPKGKVSSIVHVCNLV
RPFTLGQLKELLNRTGSVVEDSFWIDKIKSHCYVTYSSTEEAVATRAALHGVKWPQSNPK
VLSVDFCEQNELDFHRGLLTVDPREEHRPQPGVGPGGPKVRPGVLPPLMDGRGDRGVVGG
VRDQWAEREREMERRERTRAEREWDRDKVRDFGGKPGEERERGRRSRSLDRERRRKERDG
KEKKTDKKDEPPAKLLDDLFNKTKAAPCIYWLPLTEEQANQRGKEREERQKERERRRKEQ
QEEEDKKREEERKERIKSREKEGGAAVSTGSVSVRGSEGDRDRERERGREREGEKRRDSG
GFRPRGPDTKPSVGFRRSRSRSNPRDKRR
NT seq
4950 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgaagatgttacgctgaatggtaaacctctacaatcgctccgtgtggcagac
ttgaaagccgctttggagcaacgatgcctccctaaaagcggggcgaaaaatacactcatt
aagcgactgaaaggggctctaatgttggagaatcttcagaggacctccactccccatatt
gggctccagcccaactcccagattggggaggagatgagccaaaacagctttataaagcag
tacctggctcagcagcaggagctcctccgccagaggctggagagagaggccagggaggca
gccgaggccgacgaaagcccagcgggccctgaggaggaggagcacacagaggagggcaac
gacagcgattcctataaccctgacaagcatcgccccatgccctcccagcccccactgacc
cgggctgaggaagagggaggagggccaatgatgatggggcaccagggccaagggatgatg
atggggcaccagggccaaggaatgatgatggggaaaggccaggggatgatgtcccagggt
atgggccaagggatgatgtctcgcagaccagactttggtccaggctctgtgcctcaggag
tcttctgacgcccccggaggtcctggatcctggatgcagcagcgtccctccctccaacat
ggcctccaccacgaggagcccaccaccccctccccgccacgagctgtggcctccctgtcg
gtgcgcgtcctaggggaccctgagcgccagggcctgcccccgtccatgccaccccgcgcc
cagacccaggagaaggaaggcaccgccccggcggatgacgatcgacccgcccactctgtc
ctccacctcagccgctccgcccgggcagcagctggcagtaacagtgtccaggaagactgt
gacgatgatgatgacagcagtgaggaggatgaagatgagtggggacctgcggcgaggaga
gggggcggtggcggaagagggttagcccctcccccccagccccagcagccttcccccagc
atcccagctgcccgagagagatctagacgcaagcttcagcctccgcaacacatcccccct
cagcaggtagtacaccagccccccatgcagctccggcagcccaccccgcccccctctcca
cccccagagctctccttccccctccccgacacccccaaacagagcccgcccgacatggat
gaggagccagaaggagcaggggctggggtgtccgtccgcccccctccaggtggcctccag
aggcaggactctgactccagctcccgatccagcagcccagagccccgagccaagcgacga
cccggacccctctccttgctggctcgcaagatggcgtccgagggagcttacgggaagaga
ggtgagggtgcgccagcggacggccagacaggtcctggaggggaggcttccagaccagga
gatggagttggcagcagccaaggagctggagcaggaccgggggttgaggtggtcatgttc
cctggggcttctatcacccacacaggaggcagcagcacagggcacacaggatttgtcact
gtacctgaggtccctgcaccagtggttatgtttggatcaggagcccagtcccatcctctc
cctctgctgtctgtggcagctgtccccagcttaaccctcaccaccaagccccagtgtcca
tctggagagacggcacagaagaagacagagaaagaaacaaagcaggcggaggaaaaggag
aggaagatgaagcaggtggagaaggagagtcacctgccgccatggcagcgtggacgtgac
ttgacgcttccatctgcgtcttcacaatttgggtctgggggttcagaggagcctgtgatg
gaccagggagacaccccgaaaaagtcacccttcggcagggacaaacccctctcctccgct
cccggctcagccatggcgaccaccagctccccgcctgccatcacccccaagaagccccgc
atgttctccgacacctcttccggctccatgatctcccctcccaaacctgtgcagcagggg
tcagtggtgttgaccaccccaggggaactccctgaaccccatggtgtatctgagataccc
caggtagtccttgtctcaggggcccagcagcacacagacgacaccatggaggttaccgca
ctgaacaaggtgtccgtagagaagcctggatggaaagctggaggagacgatgagaagctg
gagaaagagcgtgccagcctggcggagaaggagcgtgccagcctggcggagaaggagcgt
gccagcctggcggagaaggagcgtgccagcctggcggagaaggagcgtgccagtctggcg
gagaaggagcgtgcctgcctggcggagaaggagcgtgcctgcctggcggagaaggagcgt
gcctgcctggcggagaaggagcgtgcctgccaggcggagaaggagcgtgcctgccaggcg
gagaaggagcgtgcctgccaggcggagaaggagcgtgcctgccaggcggagaaggagcgt
gcctgccaggcggagaaggagcgtgcctgccaggcggagaaggagcgtgccagccaggcg
gagaaggagcgtgccagccaggcggagaaggagcgtgccagcctggcggagaaggagcgt
gccagcctggcggagaaggagcgtgccagcctggcggagaaggagcgtgccagcctggcg
gagaaggagcgtgccagcctggcggagaaggagcgtgccagcctggcggagaaggagcgt
gccagccaggcggagaaggagcgtgccagccaggcggagaaggggacttctaaacccggg
gagaccaagagaaggggacctgaagagactgttgaggttgagcccatgggacctgttcta
cccccttcttacccaggtaagggagaagatgagaggaaggggaaggaagatgagaggagg
aggaggaaggaagatgagaggaagaaggaagcagagcgaggcaggcgtggggagagggtg
aggcacaggaggtcatctccctctagtggtggcgactcttcatcctcggactctggatcc
tcttcgtcacgttcctctggctccacctcctcccgggacaaaaaaaagaagactggcaca
ggaaaaggggatgaaaagagaagactgtacaaaggaggagagaagaaacaatctgccagg
gaggtaaagcagtcttccctgtcagagccatctggccctatggaggtggagaggccagac
ccaggccagacccagcccacccccgtcggagacccacagaacagtgagggctgcatggag
gagagcaccactcctaaagcgttcgctgcacgcaagatctccttgaccacaggcagtaag
acgtctccagagggaggagcagcagcagcagcagggggggaggcagagtccgggaccgcc
gctgggaggaagaggaggtggggatccagcacggccgtcaacgccaagaaaccatccatc
agcatcaccacagactcactcaagtctctgatcccagacatcaagcccagtcaggatgct
gtggtggatctccaccctgatgacatccagttgtctggggacgaggacaccaccagggag
gacaagggcctcaagatcagacgcactgtcacacaggtggttccaagtgaaaaccaggag
aatggccaaggagagcaagatgaagaggaggaggagaagaaacaggagcatgacagagag
aagacacagaaagagaagaggaaggacagctactcagaagacaccatggagtctcagtcc
tccgctacgcacgacaccgacgctaagaaagtcactcccagtgatacgctggtgcgtcgc
tccatcagccagcagaagtcaggtgtgtctgtcaccatcgacgacccggttcgcaccgcc
aaacagccctctccgcccaaaggcaaagtctccagcatcgtccacgtctgtaacctggta
cgacctttcacgctgggtcagctgaaggagctgctgaacaggacaggctcagtggtagag
gatagcttctggatcgacaagatcaagtctcactgctacgtcacttactccagcacagag
gaggctgtggccacacgagctgcgctccacggggtgaagtggccccaaagcaaccctaag
gttctcagtgtggacttctgtgagcagaatgagctggactttcacaggggcctactgacc
gtggatcccagagaggagcaccgcccccagcctggtgtgggtcctggaggtcccaaagtc
cgaccgggcgtgctgccccctctgatggacgggcgcggggaccgcggcgtggtcggaggg
gtgcgggaccagtgggcggagagagagagggagatggaacgccgggagaggaccagggcg
gaacgtgagtgggaccgggacaaggttcgagacttcggaggcaaaccaggagaggagagg
gagagggggaggagatctcgctccctggatagagagagaaggcggaaggagagggacggc
aaggagaagaagaccgacaaaaaggatgagcctcctgccaaattactagacgacctcttc
aataagaccaaagcagctccctgtatatactggctccccctcactgaagaacaggcaaac
cagaggggaaaagaacgggaagagcgacagaaagaacgagagaggaggcggaaagaacag
caggaggaggaggacaagaagcgagaggaggagagaaaggagagaattaaaagcagagag
aaggagggaggagctgcggtaagcactggaagtgtgagtgtccggggatctgagggagac
cgggatagagaaagggagcgagggagggagagagagggggagaagaggagggacagtggt
ggattcagacccagaggtcctgatactaaaccctctgttgggttccgacgctcccgtagc
cgtagcaacccccgagacaaacgccgttga
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