Salvelinus fontinalis (brook trout): 129865654
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Entry
129865654 CDS
T11136
Name
(RefSeq) collagen alpha-1(XXV) chain-like isoform X1
KO
K24356
collagen type XXV alpha
Organism
sfon Salvelinus fontinalis (brook trout)
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sfon00536
]
129865654
Glycosaminoglycan binding proteins [BR:
sfon00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129865654
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
129865654
NCBI-ProteinID:
XP_055794568
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All DBs
Position
11:complement(36780182..37095310)
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AA seq
662 aa
AA seq
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MKVAETRGAHKCAEKMEREATSLKRRYCCTTVMNIISSLLSVASLAFCILLSLQTSEIKD
RVLDLETRHGEHVFHRVPGFSVDQFNSLIQERVDELLSQRSYEHFAKIRIARQVSPSPDC
NCPPGSPGKRGRRGRNGEPGPPVSIDDFTASRSVGTPGPQGEKGDQGDQGPRMVFPKINH
GFLSADQQLIKRRLIKGDQGSAGPPGPPGPPGSPGPRGPPGDTGKDGPRGVTGLPGEPGT
TGDLGLMGPLGPPGIPGVDGLKGEMGERGEKGDLGEDGQRGEGGEKGDAGSSAAGIKGEP
GEPGHGGAKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGERGELGPPGKGERG
ETGPSGQKGGPGEAGNPGPRGSKGETGDKGVLGSMGPRGPPGQKGDQGATEIIDYNGNIQ
EALKKITTITVTGPPGPPGLSGTAGIKGDQGMPGLPGLDGEMGFKGSKGDMGIPGTSGEK
GTVGLPGLPGVNGLKGDKGDSGLSGPQGPSIIGQPGAPGPHGPPGPMGPHGFPGPKGEAG
NHGLKGVRGGSGYKGDRGPLGLPGASGLDGKPGIRGMDGPVGPSGPAGPKGDIGERGAAG
EPGPRGPYGLPGAAGTPGLDGFRGFKGEKGEPGQPGLDGLDAPCQLVQYSSFLLPLQCMA
LA
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgaaggttgcagagaccaggggagcacataagtgcgctgaaaaaatggagagagaagcg
acatctttgaagcggcgatattgctgcacaacagtcatgaacattatctcgtctttatta
tctgtggcgtcccttgccttttgtatattattaagtctgcaaacatcagagatcaaggac
agggtcctggatttggaaactagacatggcgagcacgtatttcaccgggtccccggcttt
tcggtggatcagtttaattcattgattcaagagagagtggatgagctcctgtcacaacgc
tcttatgaacatttcgccaagatacggattgcccgacaagttagccctagtcctgattgc
aactgtcccccaggctcgccaggaaagcggggaagaagaggccggaatggtgaacctgga
cctcctgtaagtatagatgacttcacagcctctcggagtgtgggtactcctggtccacag
ggtgagaagggggatcaaggtgaccaaggaccgcggatggtcttccctaagatcaatcat
ggctttctttctgctgaccagcagctcataaagcggcggcttattaagggagatcagggt
tcagcaggtccgccaggacctcctgggcccccaggttcccctggccccagagggccacca
ggggacacaggcaaggatgggccccggggagtgacaggtctgccgggagaacctgggaca
acaggagacctaggactgatgggtccccttgggcctcctggcatcccaggtgttgatggg
ctgaagggtgaaatgggagagagaggtgaaaagggtgacttgggagaagatggtcaaaga
ggtgaaggcggggagaagggtgatgcgggctcctctgcggcaggcatcaagggtgaacca
ggagagccaggacatgggggagcaaagggagagccaggacttccagggcttcctggactt
cccgggattaagggtgagcctggattcctaggaccacagggagaaccagggctcccagga
ctaccaggaaccaagggtgagcgaggggaactgggcccaccaggcaaaggagagcggggc
gagactggaccatccggtcaaaagggagggccaggagaggcagggaacccaggccctaga
ggttcaaagggagaaacaggagacaagggagtcctgggctccatgggaccaaggggaccc
cctgggcagaaaggtgaccaaggagccactgaaatcattgattacaacggtaacatccaa
gaggctttaaagaagattaccactattacagtgacgggtccccctgggcctcctggacta
tcaggaacagcgggaatcaagggagatcaaggcatgcctggcctccctgggctggatggt
gaaatgggttttaaaggttccaaaggagacatgggaatccctggcacatctggagaaaaa
ggaactgttggcttacctggtttaccaggcgtcaatggattgaaaggggataagggtgat
tccggtctgtctggtcctcaagggccctcaattattggccaacctggagcacctgggccc
catggacccccaggtcccatgggaccccatggattccctggaccaaagggggaggctggg
aatcatggtctgaagggagtgcgcggggggtcagggtacaagggggacagaggacccctg
ggcctccccggagcctccggcttggacggcaagccaggaattaggggtatggacgggcct
gtgggtccctccggtccagccgggccaaagggggacataggtgagagaggagctgcaggt
gaacccgggccaagggggccttatggacttcctggagcggctggaacacctggccttgat
gggttccggggctttaagggtgaaaagggagagccagggcagcctggtctggatgggctg
gatgccccgtgccaattggtacagtattcctcttttcttctacctctccaatgcatggct
ttagcatga
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