Salvelinus fontinalis (brook trout): 129866679
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Entry
129866679 CDS
T11136
Name
(RefSeq) contactin-1a-like isoform X1
KO
K06759
contactin 1
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon04514
Cell adhesion molecule (CAM) interaction
sfon04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
129866679
04517 IgSF CAM signaling
129866679
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sfon04515
]
129866679
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
sfon00537
]
129866679
Cell adhesion molecules [BR:
sfon04515
]
Immunoglobulin superfamily
Contactins
129866679
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
sfon00537
]
Others
129866679
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
fn3
V-set
FN3_DSCAM-DSCAML_C
Ig_5
Ig_VEGFR-1-like_5th
Fn3_VIN3
Sp38
Pur_ac_phosph_N
C2-set_2
Ig_PDGFR_d4
Fn3_ROS1
Motif
Other DBs
NCBI-GeneID:
129866679
NCBI-ProteinID:
XP_055795455
LinkDB
All DBs
Position
12:4651413..4772365
Genome browser
AA seq
1021 aa
AA seq
DB search
MLHLLLLLSLTLPSTDSLPDASVFGGEPGFYGDDATGYGPVFEDQPVETIYPEESPEAKI
TMSCRARANPPATYQWRLDSRNIDLDGDNHYTLVGGDLVISNPIKNKHVGNYSCVATNDY
GTVVSREAGVQFGYLDFFSSEEREAVRVKEGQGAVLLCAPPPHYPYELSFRWILNEFPIF
ITLDKRRFVSQTTGNLYISKVDSSDSGNYSCFVSSTSITKSVFSKFIPLVPLAERPIRKY
PADIKVKFPDTYALVGQNVTMECFALGNPIPQIRWKKMNGELPSNHDVSMAGARLHLYNV
QYEDEGTYECEALNSKGKDWHRARVSVEAFPEWTESINSTEKDISSDYTMSCVASGKPKP
RVQWLKNSYPYDKRDLRFSGLTFEDSGMYQCIAENRHGVIYANAELRVIACAPTFEHNPV
KWRILGAKNGRVVIECKPKAAPKPSFSWSKGAELLFNSTRVLIWEDGSLEILNVTEADEG
RYTCFAENNRGKANSTGSLSITEATKITLAPSNADVTVGESTHMQCAASHDSTLDITFVW
TLDAHAIDFDREGSHYERNLNGDSSGELIIKNTQLNHSGRYTCTAQTPVDNVTASANLVV
RGPPGSPGGVRVEEIRDKSVRLIWSRGTDNHSPISKYTIQGRDSFSQEDWRDATTSPPDV
EGNAETATVVDLLPWTEYEFRVIATNTLGTGDPSSPSPKVTTLEAVPVVAPSDIGGGGGN
SRELTITWTPVQPQYYYGRNFGYIIAFKPRDGYEWRKVTVADPEAKHYVHKDSSILASTE
FEVKVKAFNSKGEGPYSLMAVVYSARDVPSKAPTSVGARALSATEAIVWWLPVTQHTVEG
YQVRYWRKAEDSETSSQRVVVSSRENQTRLDNMTPDSHYLVEVKAYNAAGYGPSSQHLQI
YTKKAPPSRPPKIISKKLKGTSVNIAWEHVEPLANESTIDGYKVLYRQASKSTGMLFTTG
KRSIDLPMHKDGDYIVEVRAHSEGGDGAVAQVRISAGGVMAAKSLSLASLLLVALLCLMG
L
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgctgcacctcctcctcctcctgtccctcactctcccctccactgactctcttccagat
gcatctgtcttcggaggggaacctggtttctacggagacgatgctacaggttacgggccg
gtgtttgaggatcagccggtcgaaaccatctaccctgaggagtcgcctgaggccaaaatc
accatgagctgtcgagcacgagccaacccacctgccacataccagtggaggttggacagc
cggaacatagacctggacggtgataaccattacactctggtcgggggcgacctggtcatc
tctaaccccatcaagaacaaacacgttgggaactactcctgtgtggccaccaacgactac
ggcaccgtggtcagccgagaggctggcgtccagtttggatacctggacttcttctcgtct
gaggaaagagaggcggtgcgcgtgaaggagggccagggggcagtcctgctctgcgctcct
cctccacactacccatacgagctgtcattccgctggattctgaatgagttccccatcttc
atcacgctggataaacgtcgctttgtctcccagaccacagggaacctctacatctctaag
gtggattcatcagacagtggcaactactcctgcttcgtctccagcacatccatcaccaag
agcgtcttcagcaagttcatccccctcgtccccctggctgaacgtccaatcaggaaatac
cccgctgacatcaaagtcaagttcccagacacttacgcgctggtgggacagaatgtcaca
atggaatgcttcgccctgggaaaccccatccctcagatccgctggaagaagatgaacgga
gagctgccgtccaatcacgacgtcagcatggcgggcgcccgcctccacctgtacaacgtg
cagtatgaggacgaggggacatacgagtgcgaggccctcaactccaaaggaaaggactgg
cacagggcacgggtctctgtagaagcattcccagagtggacagagtccatcaacagtaca
gagaaggacatcagtagtgactacaccatgtcctgtgtggctagcggcaagcccaaaccc
cgcgtacaatggctcaagaacagctatccctacgataagcgcgatctgaggttcagtggt
ctgacgttcgaggactctgggatgtaccagtgtatagcagagaaccgccatggagtcatc
tatgctaacgcagagctgcgagtgattgcgtgcgcccccacgtttgagcacaaccctgtg
aagtggaggattctgggagctaagaacggcagagtggtcatagagtgtaaaccgaaagca
gctcccaaaccctcgttctcctggagcaagggcgccgaactgctcttcaactctaccagg
gtgttaatctgggaggatggtagtctggagattctgaatgtgaccgaagcagacgagggg
cgttacacctgctttgctgagaacaatcggggcaaggccaacagcacaggctccctctcc
atcacagaggccactaagatcaccttggctccttccaacgcagacgtgacggtgggggag
agtacccacatgcagtgcgccgcgtcacatgactccacgctggacatcacattcgtctgg
accctggacgcccacgccatcgacttcgaccgggagggatcccactatgaacgcaacctg
aatggcgattccagtggagagctgatcattaagaacacccagctgaatcactctggacgt
tacacctgcaccgcccagacccctgtggacaacgtcaccgcatccgccaatctggtggtc
agaggtccacctgggtctccaggtggggtgcgcgtggaggagatcagggataagagtgtg
cgtctgatctggagccgaggtacagacaaccacagccccatctctaaatacactatccag
ggccgggactcgttctctcaggaggactggagagatgccaccacatcccctccggatgtg
gaaggaaatgcagagacagccacggtggtggacttgcttccctggacagagtatgagttc
agggtgatagccaccaacaccctggggacaggagaccccagcagcccctctcccaaagtc
accacgctggaggcagttcctgtggtggctccctcagacatcggcggcggtggcgggaac
agcagggagctgaccataacttggacgccggtgcagccacagtactactatggacgtaac
tttggctacatcatcgccttcaagccccgggatggctacgagtggaggaaggtgactgtg
gcagaccccgaggctaaacactacgtccacaaagactcctccatcctcgcctccacagag
tttgaggtcaaagtcaaggccttcaacagcaaaggggaaggaccctatagtctcatggct
gtcgtctactctgcgcgggacgtgccatctaaagcccctactagtgtgggggccagggcg
ctgtccgccactgaggccatcgtgtggtggcttcctgtcactcagcacaccgtagaaggc
taccaggtgcggtactggaggaaggcggaggacagcgagacgtccagtcagagggtggtg
gtgtccagcagagagaaccagaccaggctggataatatgaccccagactcccactacctc
gtagaggtcaaggcctacaatgcagccggatacggacccagcagccaacacttgcagatc
tacaccaagaaagcccccccaagccggcctcctaaaataatcagtaaaaagctgaaagga
acgtcagtaaacatcgcctgggaacatgtcgaacccttggccaacgaatcaacaatagat
ggctacaaggtcctgtacaggcaggccagcaaatccactgggatgctgtttaccactggg
aaacggtccatagacctgcccatgcacaaggatggggactacatagtggaggtcagggct
cacagcgagggaggggacggggctgtggcccaagtacgcatctcagctggaggcgtcatg
gctgccaagtccctcagcttggcctccctgctcctggtggctctgctctgcctgatgggc
ctctga
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