KEGG   Salvelinus fontinalis (brook trout): 129867378
Entry
129867378         CDS       T11136                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4 isoform X1
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
sfon  Salvelinus fontinalis (brook trout)
Pathway
sfon03018  RNA degradation
sfon03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sfon00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    129867378
  09123 Folding, sorting and degradation
   03018 RNA degradation
    129867378
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sfon03019]
    129867378
   03041 Spliceosome [BR:sfon03041]
    129867378
Messenger RNA biogenesis [BR:sfon03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     129867378
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     129867378
Spliceosome [BR:sfon03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    129867378
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 129867378
NCBI-ProteinID: XP_055796712
LinkDB
Position
12:complement(39228499..39232927)
AA seq 150 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGMQQNKQQGKGRGGGAGRGVFGGRGRGMP
GVGMPGVGRGQQQQEKKPAGGKPQGVKNQH
NT seq 453 nt   +upstreamnt  +downstreamnt
atgctacctctatctttgctgaagactgcacagaaccaccctatgttggtggagttgaag
aatggagagacgtataatggacacttggtcagttgtgacaactggatgaatataaattta
cgagaagtcatctgcacttcaagggatggagataaattttggaggatgcctgagtgttac
atcagaggaagcaccataaagtacctgcgtatccctgatgagatcatcgacatggtgaag
gaagaggtggtgtccaagggccgcgggcgagggggcatgcagcagaacaaacagcagggc
aagggtcgagggggaggagcaggcagaggtgtgtttggaggccgtggtcggggcatgcca
ggagtgggcatgccaggagtgggcagaggccagcagcagcaggagaagaagcctgctggt
ggcaaacctcagggagtcaagaaccagcactga

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