Salvelinus fontinalis (brook trout): 129867379
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Entry
129867379 CDS
T11136
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03013
Nucleocytoplasmic transport
sfon03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129867379
03015 mRNA surveillance pathway
129867379
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129867379
Enzymes [BR:
sfon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
129867379
5.6.2.5 RNA 5'-3' helicase
129867379
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
129867379
mRNA cycle factors
Common to processing body (P body) and stress granule
129867379
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
NPHP3_N
ATPase
SLFN-g3_helicase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
UvrD_C_2
AAA_16
SRP54
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
129867379
NCBI-ProteinID:
XP_055796714
LinkDB
All DBs
Position
12:39243882..39262832
Genome browser
AA seq
1104 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDEGLHNGGVDDVAKASQLLAELNFEEDEEDTYYIKDLPLHACSYCGIHDPASVVYCNTS
KKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAK
ADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQ
QINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKL
KESQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGELAPLWKGIGH
VIKVPDTPFVKDYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDE
TSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPP
GTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLCAKSREAIDS
PVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVIC
CTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKK
AAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKG
FDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIIT
PYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLN
DPRRLNVALTRAKYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFS
KPRKLVNAINPGARFMSTAMYDAREALIPGSAYDRSSAGRPSNMYFQTHDQIGMIGAGPA
HMAAMNMPIPFNLVIPPMPPPGYLAQANGPAAGRGGVLKGKAGRGGRQRTRGMGNHSGSG
QSNGPNSQDVSSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVA
LSQDSTYQGERAYQHGGVTGLSQY
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagttctcaaacgctcaccttcctggacacggaggaa
gcggagctacttggggctgatacccagggctcggagtacgagtttaccgattttaccctc
cccagccagacgcaaactcaaggccaaacccagagtcagctggacaatcaggtgaatggt
cctgatgaagggcttcacaatggaggagtcgatgatgtggccaaggcgagccaactcctt
gctgagttgaacttcgaggaagatgaagaagacacctattacatcaaagacctcccactg
catgcctgcagttactgtggcatccatgatcctgcatctgtggtgtactgcaacacaagc
aagaagtggttctgcaatggacgtggcaatacatctggcagccacatagtgaaccacttg
gtgagagccaaatgtaaagaggtgactctgcacaaagatgggccactgggcgagacggtg
ctggagtgctacaactgtggctgtcgcaacgtcttcctccttggcttcattcccgccaag
gccgactcggtggtggtgctgctgtgcaggcagccatgtgccagtcagagcagcctgaag
gacatcaactgggacagctcccagtggcagccgctgatccaggaccgctgctttctgtcc
tggctggtgaagatcccctcggagcaggagcagctccgggcccgccagatcaccgcccag
cagatcaacaagctggaggagctctggaaggataatcccacggccactctggaggacctg
gagaagcccggcgtagacgaggagccccagcatgtgctgctgcgctacgaggatgcctac
caataccagaacatcttcggccccctcgtcaagctggaggctgactacgacaaaaagctt
aaagagtcccagacccaagataatataacggtcaggtgggacctggggctaaataaaaag
cggattgcctatttctccttgcccaagacggattcaggtgacatgcggctgatgcaagga
gatgaaatatgtctgcgctacaaaggagagctggccccactctggaagggcatcggccat
gtcatcaaagtcccagacacaccctttgtgaaagactatggagatgagattgctatagaa
ttgcgcagcagtgtcggagctcctgtggaaataccccacaacttccaggtggattttgtg
tggaagtccacttcctttgacagaatgcagagtgccctgaagacctttgctgtggacgag
acatccgtgtcaggctacatctaccacaagctgctgggccacgaggtggaagatgtcatc
atcaagtgtcagttgcccaaacgcttcactgcacagggcctgcctgacctcaatcactct
caggtgtatgctgttaagactgtgctgcagagacccctcagtcttatccaaggccccccc
ggcactgggaaaacggtcacctctgccaccatcgtgtaccacctcgccaggcagggcaat
gggcccgtgctggtgtgtgctcccagtaacatcgcagtggaccagctgactgagaagatc
cacatgtcgggcctgaaggtggtcaggctgtgtgctaaaagcagagaagccatcgactcc
cctgtctccttcctggccctgcacaaccagatccgcaacatggacagtatgccagagctc
caaaagctgcagcagctgaaggatgagaccggggagctgtcgtccgctgacgagaagcgc
taccgggccctgaagcgcaccgctgagagagagcttctcatgaatgcagatgtgatctgc
tgtacctgtgtgggggcaggagacccccgtctggccaagatgcagttccgctccatccta
atcgatgagagcacccaggccaccgagccagagtgcatggtgcccgtggtcctgggtgcc
aagcagctcattctggtgggagaccactgccagctgggcccagtagtgatgtgtaagaag
gcagccaaagcaggcctgtcccagtccctgtttgagcgtctggtggtgctgggcatcagg
cccatccgtctgcaggtgcagtaccgcatgcacccggccctcagcgctttcccctccaac
atcttctacgagggctccctgcagaacggagtcactgctgctgaccgcatcaagaaaggc
tttgacttccagtggccacagccagacaaacccatgttcttctatgtgactcaaggccag
gaggaaatcgctagctctggaacatcctacctgaacagaactgaggcagctaatgtggag
aagatcaccaccaggctgctgaaggctggagccaagcctgaccagataggcatcatcacc
ccctacgagggccagaggtcctacctggtgcagtacatgcagtttagcggctccctccac
accaagctctaccaggaggttgagatcgccagcgttgatgcgttccagggtagggagaaa
gacttcatcatcctgtcatgcgtccgagccaacgagcaccagggcatcggcttcctcaac
gacccacgccgtctcaacgtggccctcaccagagccaagtatggggtgatcattgtgggc
aaccccaaggccctgtccaagcagcctctgtggaaccacctgctcaactactacaaggag
cagaaggttctggtggagggacccctcaacaacctgcgagagagcctgatgcagttcagc
aagccccgcaagctggtcaatgccattaaccctggagcccggttcatgagcactgccatg
tatgatgcccgcgaggctctcatccctgggtctgcctacgatcgcagcagcgcagggcgt
ccatccaacatgtacttccaaacccacgaccagatcggcatgattggggccgggccagcc
cacatggcagccatgaacatgcctattccattcaacttggtgatacctcccatgcctcca
ccaggctacctggcccaggctaacggccctgctgcaggtcgtggtggggtgctgaagggc
aaagcgggacgtggcgggcgccagaggacccgcggcatggggaaccacagtggcagtgga
caaagcaatgggccaaacagccaggacgtgtcttcccagcccttctcccaggggccactc
acccagggctacatcaccatgagccagccctcacagatgagccaacctggcctctcccag
cctgaactgtcccaggacagttatctaggcgatgagttcaagtcccagatcgacgtggct
ctgtcgcaggactcaacttaccagggtgaacgtgcataccaacatggtggggtgactgga
ctgtcacagtactaa
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