Salvelinus fontinalis (brook trout): 129867913
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Entry
129867913 CDS
T11136
Name
(RefSeq) serine/arginine-rich splicing factor 1B-like
KO
K12890
serine/arginine-rich splicing factor 1
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03040
Spliceosome
sfon05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129867913
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
129867913
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sfon03041
]
129867913
Spliceosome [BR:
sfon03041
]
Common components
Common spliceosomal components
SR proteins
129867913
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_3
RRM_7
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
129867913
NCBI-ProteinID:
XP_055797370
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All DBs
Position
13:complement(2688537..2700106)
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AA seq
255 aa
AA seq
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MSGDNMSGGGSVVRGPAGNNDCRIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGP
PFAFVEFEDPRDADDAVHGRDGYDYDGYRLRVEFPRSGRGGGRGGMGGGRGGGDGGGPRG
RYGPPSRRSEYRVIVSGLPSSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTY
AVRKLDNTKFRSHEGETAYVRVKVDGPRSPSYGRSRSRSRSNGRSNSRSLSFSPPRRSRA
SPRYSPRHSRSRSRT
NT seq
768 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggggataatatgtcgggaggcgggagcgtggttcgtggcccagcgggaaacaac
gactgtcggatctacgtgggtaacctaccgcctgatattcgaaccaaagacgtagaggat
gtgttctataagtacggagcgatccgggatatcgacttgaagaaccggagaggaggaccg
ccgttcgctttcgtggaattcgaggaccccagagatgctgatgatgcagtgcacggtcgt
gatggttacgactacgatggttaccgtctccgggtggagttcccccgtagtggtcgtggc
ggggggagaggggggatgggcggtggaaggggcgggggtgacggaggaggacccagagga
agatatggacctccatcacgacgctctgagtaccgggtcatcgtctccggtctcccctct
agtggtagctggcaggacctaaaggaccacatgcgcgaggcaggtgatgtatgttatgct
gacgtgttccgggacggtaccggcgtggtggagttcgtacgcaaggaggacatgacctac
gctgtccgcaagctggacaacaccaagttccgctcccacgagggagagactgcgtacgtg
cgtgtgaaggtggatggacctcgcagccccagttacggacgctcccgctctcgtagccgt
agcaacgggcgtagcaacagccgctcactcagcttctcaccgccgcgacgcagccgggcc
tctccacgctactcaccacgacactcgcgctcccgttcccgcacctag
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