Salvelinus fontinalis (brook trout): 129868300
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Entry
129868300 CDS
T11136
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon04142
Lysosome
sfon04144
Endocytosis
sfon05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
129868300
04142 Lysosome
129868300
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
129868300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sfon04131
]
129868300
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sfon04147
]
129868300
Membrane trafficking [BR:
sfon04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
129868300
Exosome [BR:
sfon04147
]
Exosomal proteins
Proteins found in most exosomes
129868300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
129868300
NCBI-ProteinID:
XP_055798124
LinkDB
All DBs
Position
13:complement(25276104..25327232)
Genome browser
AA seq
1686 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA
LVTDNAVYHWSMEGDSQPIKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAAGFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPATGN
QPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRISG
ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGA
EELFARKFNNLFAGGNYSEAAKVAANAPKGILRTPDTIRKFQSVPAQPGQTSPLLQYFGI
LLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYL
RANVPNKVIQCFAETGQFPKIVLYAKKVGYTPDWIFLLRNVMRISPEQGLQFSQMLVQDE
EPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAIL
GNQMFTNYDRAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLSV
EDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTNSLTELFESFKSFEGLFYFLGSIVN
FSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKSLILVVRGQF
STDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPYY
DSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRRDPDLWASVL
LESNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTS
AVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYMEV
VQAADQSGNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQ
VGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC
VDGKEFRLAQMCGLHIVVHADELEELINYYQDRAYFEELITMLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEEAHLWAELVFLYDKYEEFDNAIITMMN
HPTDAWKEGQFKDIITKVANVELYYKATQFYLEFKPLLLNDLLIVLSPRLDHSRAVNFFS
KVKQLPLVKPYLRSVQNHNNKSVNEALTNLFITEEDYQALRTSIDAYDNFDNISLAQRLE
KHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDTELAEELLGWFLTE
DKKECFAACLFTCYDLLRPDVVLETAWKHNIMDFSMPYFIQVMREYLFKVDAIKEKVDKL
ETSESLRKEEEQATETQPIVYGTPQLMLTAGPSVPVPPQQAYGYGYQAPAGYPQAPQAQP
GFGYGM
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatcctgcctattcgctttcaggagcacctgcagctccagaacttgggcatt
aacccagccaacattgggttcagcaccctgacgatggagtctgataagttcatctgtatc
cgggagaaggtgggcgagcaggcacaggtggtgatcatcgacatggccgaccctaacacg
cctatccgcagaccaatctctgcagacagcgccatcatgaaccccgcctccaaagtcatt
gcacttaaagccgccaaaacccttcagatctttaacattgagatgaagagcaagatgaag
gcccacaccatgactgatgacgtcaccttctggaagtggatctccctgaacacagtggca
cttgtgactgacaatgccgtctaccattggagcatggagggggactcccagccaatcaaa
gtctttgaccggcactccagcctggcaggctgtcaaatcatcaactaccgcactgacgcc
aagcagaagtggctgctgctcattggcatctccgcacagcaaaaccgtgtggtgggtgcc
atgcagctgtactctgtggacaggaaggtgtcacagcccatcgagggccacgccgcaggc
ttcgcccagttcaagatggagggcaacacagaggagtccacactgttctgctttgctgtg
agaggacaggccgggggaaagttgcacatcattgaggtgggcaccccagccacagggaac
cagccttttccaaagaaagcagtggatgtgttcttccctccagaggctcagaatgacttc
ccagtggccatgcagataagctccaagcaggatgtggtgttcctcatcaccaaatatggc
tacatccacctgtatgacctggagactggcacctgcatctacatgaacaggatcagcgga
gagaccatctttgtcacggcccctcacgaagccaccgccggcatcattggagtcaacagg
aaaggacaggttctgtcagtgtgtgttgaggaggagaacatcatcccttacatcaccaat
gtgctgcagaacccagacctggccctgcgcatggccgtccgtaacaacctggccggggcc
gaggagctgttcgcgcgcaagttcaacaacctgtttgctggcggaaactactctgaagct
gccaaggtggccgccaacgcaccaaagggtatcctgcgtactccagacaccatccgtaag
ttccagagtgtgccagcccagccgggccagacctctcccctgctgcagtactttggcatc
ctgctggaccagggccagctcaacaagtttgagtctctggagctgtgcaggcccgtccta
cagcagggacgcaagcagctgcttgagaagtggctcaaagaggacaagctggagtgttct
gaggagctgggggacctggtgaagtcagtggaccccaccctggctctctccgtctacctg
agggccaacgtacccaacaaggtcatccagtgcttcgctgagaccggacaattccccaag
atagtcctgtacgccaagaaggtgggctacactccagactggatcttcctgctgaggaat
gtgatgaggatcagtccagaacagggcctgcagttctcccagatgcttgtccaggacgag
gagcctctggctgacattacacagatcgtggatgtctttatggagtataacctgatccag
cagtgtacctccttcctattggacgccctgaaaaacaacaggccttctgagggaccgctg
cagacacgcctcctggagatgaacctcatgcacgccccacaggttgctgatgccatcctg
ggcaaccagatgttcaccaactacgaccgtgcccacatagcccagctgtgtgagaaggct
ggtctgctgcagagagctttagagcattacaccgacctgtacgacatcaaacgggccgtg
gtgcacacacacctgctcaacccagagtggctggtgaacttctttggctccctctcagtg
gaggactctctggagtgcctgagggccatgttgtctgccaacatccgtcagaacctgcag
atctgtgtccaggtggcttctaagtaccacgagcagctctccaccaactccctaacggag
ctcttcgagtccttcaagagtttcgagggtctgttctacttcctgggttccattgttaac
ttcagccaggacccagaggtccacttcaagtacatccaggcagcctgcaagacgggacag
atcaaagaggtggagaggatctgccgagagagcaactgctacgaccccgaacgagtcaag
aacttcctcaaggaggccaagctgaccgaccagctcccactcatcattgtgtgtgaccgc
ttcgactttgtccatgacctggtcctctacctgtaccgtaacaacctgcagaaatacatt
gagatctatgtgcagaaagtgaaccccagccgtctgccagtggtgataggagggcttctg
gatgtggactgttctgaggacgtcattaagagtctgatcctggtggtcagaggacagttc
tccactgacgaactagtggctgaggtggagaagaggaaccgactgaagcttctcctcccc
tggctggaggcccgtatccatgagggctgtgaggagcccgctactcacaatgccctggcc
aagatctacatcgacagcaacaacaaccccgagcgcttcctgcgtgagaacccctactac
gacagccgcgtggtgggcaagtactgcgagaagagggaccctcacctggcctgcgttgcc
tacgagagaggacagtgtgaccaggaactcatcaacgtgtgcaatgagaactccctgttc
aagagtctgtctcgctacctggtccgtcgcagagacccggacctgtgggccagcgtgctg
ctggagagcaaccccttcagaagaccactcattgaccaggtggtgcagacagccctgtct
gagacccaggacccagaggaggtgtcagtcacagtaaaggccttcatgactgcagacttg
cccaacgaactcattgagctgttggagaagatcgtactggataactctgtcttcagtgaa
cacagaaacctgcagaacctgctgatcctgacggccatcaaggcagaccggacccgtgtg
atggagtacatcaaccgcctggacaactatgacgccccagatatcgccaacatcgccatc
agcaacgagcttttcgaggaggcctttgctatcttcaggaagtttgacgttaacacctct
gccgtgcaggttctcattgagcacattgggaacctggaccgggcctatgagtttgccgag
cgctgcaacgagccagctgtgtggagccagctggccaaggctcagctgcagaagggcctg
gtcaaggaggctatcgactcctacatcaaggctgacgacccctctgcctacatggaggtg
gtacaggctgccgaccagagtggtaactgggaggacctggtgaagttccttcagatggct
cgtaagaaggcccgggagtcctatgtggagacagagctcatctttgccctggccaagacc
aaccgcctggctgagctggaggagttcatcaacggacccaacaacgcccacatccaacag
gtcggcgaccgctgttacgacgagaaaatgtatgacgcggccaagttactgtacaacaac
gtgtccaacttcggccgcctggcgtccaccctggtgcacctcggggagtaccaggcggca
gtggacggggcgcgcaaggccaacagcactaggacctggaaggaggtgtgctttgcctgc
gtggatggaaaggagttccggctggcccagatgtgtggcctccacatcgtggtgcatgct
gacgaactggaggagcttatcaactactaccaggaccgtgcttactttgaggagctgatc
accatgctggaggcagccctggggctggaacgggcgcacatgggcatgttcaccgagctg
gccatcctctactccaaattcaaaccccagaagatgagagagcacctggagctcttctgg
tccagagtcaacattccaaaggttctgcgggcggcagaggaggctcacctgtgggcggag
ctggtgttcctgtacgataagtacgaggagtttgacaatgccatcatcaccatgatgaac
caccccaccgatgcctggaaggagggccagttcaaagacatcatcaccaaggtggccaac
gtggagctgtattacaaagcaactcagttctatttggagttcaagccgttgttactgaat
gacctgctcattgtgctgtcccccagactggaccactcccgtgctgtcaacttcttcagc
aaggtgaaacagctgcccctggtcaagccctacctgcgctcagtacagaaccacaacaac
aagtctgtcaatgaagcacttaccaacctcttcatcacagaggaggactatcaggctctg
aggacctctatagatgcctatgacaactttgacaacatctcgcttgcccagcgcttggag
aaacacgagctgattgagttcaggaggatcgctgcctacctcttcaagggaaacaaccgc
tggaaacagagtgtggagctctgcaagaaggacaaactctacaaggatgccatgcagtac
gcgtcagagtccaaggacacagagttggctgaggagctgctgggctggttcctgacggag
gacaaaaaggagtgctttgctgcctgcctcttcacctgttacgacctgctgaggccagac
gtggtgctggagacggcctggaagcacaacatcatggacttctccatgccctacttcatc
caggtcatgagagagtatctcttcaaggttgatgcaattaaggaaaaggtggacaagctg
gagacctctgagtccctaaggaaagaggaggagcaggcgacagagacacaacccattgtc
tatggcacaccccagcttatgctgactgctggccccagcgtgcccgtgcccccccagcag
gcctacggctacggttaccaggctcctgcaggctacccccaagcacctcaggcccaacca
ggctttggctacggcatgtaa
DBGET
integrated database retrieval system
