Salvelinus fontinalis (brook trout): 129868423
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Entry
129868423 CDS
T11136
Name
(RefSeq) replication factor C subunit 2-like
KO
K10755
replication factor C subunit 2/4
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03030
DNA replication
sfon03410
Base excision repair
sfon03420
Nucleotide excision repair
sfon03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
129868423
03410 Base excision repair
129868423
03420 Nucleotide excision repair
129868423
03430 Mismatch repair
129868423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfon03032
]
129868423
03036 Chromosome and associated proteins [BR:
sfon03036
]
129868423
03400 DNA repair and recombination proteins [BR:
sfon03400
]
129868423
DNA replication proteins [BR:
sfon03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
129868423
DNA Replication Termination Factors
ELG1-RFC complex
129868423
Chromosome and associated proteins [BR:
sfon03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
129868423
DNA repair and recombination proteins [BR:
sfon03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
129868423
Check point factors
HRAD17(Rad24)-RFC complex
129868423
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_22
AAA_14
AAA_16
Mg_chelatase
Viral_helicase1
AAA_24
AAA_11
RCF1-5-like_lid
Rad17
RuvB_N
AAA_19
MipZ
nSTAND3
AAA_18
AAA_assoc_2
ABC_tran
AAA_5
AAA_28
AAA_23
AAA_25
AAA_30
MeaB
NTPase_1
SLFN-g3_helicase
DNAX_ATPase_lid
RNA_helicase
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
129868423
NCBI-ProteinID:
XP_055798362
LinkDB
All DBs
Position
13:30635759..30641139
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AA seq
353 aa
AA seq
DB search
MDVAMNEVDSEQIQTEVQPKKDEAPAKLSSSGYELPWVEKYRPLKLNEIVGNEETVSRLE
VFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAMKDAVLELNASNDRGIDVVRNKIK
MFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPI
QSRCAVLRYTKLRDEQIMMRLLEVVERENLVTSNDGLEAIIFTAQGDMRQALNNLQSTNS
GFGYINSENVFKVCDEPHPLLVKSMLEHCVNANIDEAYKIIEQLWALGYSPEDIIGNIFR
VCKTFQMPEYLKLEFIKEIGYTHMKVAEGVNSLLQMAGLLGRLCSKTATPDTS
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atggacgtggcgatgaatgaggtagattctgagcaaattcaaacagaagtacaaccgaag
aaagatgaggcccctgcgaagttgtctagtagtggatatgagctgccatgggttgaaaaa
tacagacccttgaagttgaatgaaatagtaggcaacgaggagactgttagcagattggag
gtgtttgccagagagggaaatgtgccgaacatcattattgcaggtccccccggtacagga
aagaccaccagtattctgtgtttggcgcgagctcttctaggcccagccatgaaagatgct
gtcttggaactgaatgcctccaatgacaggggcatcgatgtagttcgaaacaagatcaag
atgtttgcccagcagaaggtcaccctccctaaagggagacacaagatcatcatcctggat
gaggctgacagtatgacagacggagcccagcaggccttgaggaggaccatggagatatac
tctaaaaccacacgcttcgctctggcatgcaacgcctccgacaagatcatcgagcccatc
cagtcacgttgtgcagtcctgcgctacaccaagctgagggacgagcagatcatgatgcgt
ctgctggaggtggtggagagggagaacctggtcaccagcaacgacggcctggaggccatc
atcttcaccgcccagggagacatgagacaggcactgaataacctacagtccacaaattct
gggtttggctacattaacagtgagaatgtgttcaaggtgtgtgatgagccacaccccctg
ttggtgaaaagcatgctcgaacactgtgtcaatgcaaacattgatgaggcttacaagatt
attgagcagctgtgggccctgggttactcccctgaggacatcatcggtaacatcttcaga
gtgtgtaagactttccagatgccggagtatctcaagctggagttcataaaggagataggc
tacactcacatgaaggtggcggagggcgtgaactccctgctgcagatggcaggcctcctg
ggtcgactgtgtagcaagacggccaccccggataccagctaa
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