Salvelinus fontinalis (brook trout): 129868522
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Entry
129868522 CDS
T11136
Name
(RefSeq) THO complex subunit 2-like
KO
K12879
THO complex subunit 2
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03013
Nucleocytoplasmic transport
sfon03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129868522
09122 Translation
03013 Nucleocytoplasmic transport
129868522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129868522
03041 Spliceosome [BR:
sfon03041
]
129868522
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
129868522
Spliceosome [BR:
sfon03041
]
Complex C
Other components
EJC/TREX
129868522
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
129868522
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
129868522
NCBI-ProteinID:
XP_055798560
LinkDB
All DBs
Position
13:complement(35353122..35432936)
Genome browser
AA seq
1587 aa
AA seq
DB search
MCGILGKMATLILPADWIKNWEKSGKHEFVQLCKNLADKTNHDSIIKDIQAALYELCWHV
VQGNFKLDLAASVLSDMMELRDDMPSILADVFSILDIETSSLEEKNKRDHYTQLVGACLL
FVPDAILKERLDPETLESLGLIKQAHQFNQKIVKIKTKLFYKQQKFNLLREENEGYAKLI
TELGQDLSGNITSHVVLESIKSLIGCFNLDPNRVLDIILEVYECRSDQDDFFLPLIKSYM
CEPLTLCHILGFKFKFNQEPNEETPTSLYHIAAALLLHNLIELEDLYVHLMPLDASIVEE
HKREITEAKQIARKLTMVVVPSEKMEDKEREKEKEEEKNDKPPDNQKLGLLEALLRIGDW
HHAQSIMDQMPAFYATSHKAIALALCQLLHLTVEPLYRRAGVPKGAKGCVMRPLRNKRAP
RPAESFEDLRRDVFSMLCYLGPHLSHDPILFAKIVRLGKGFMKEYQNEARNDHIKDKMDT
LLSCFLSIADQVLLPSLSLMECNACMSEELWGLFKLFPYQHRYRLYGQWKNETYTSHPLL
VKVKAQTVDRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQWYDNLIGPVV
DSLKYLTSLNYDVMAYCIIEALANPEKEKMKHDDTTISSWLQSLASLCGAVFRKYPIELA
GLLQYVTNTLKAGKSFDLLILKEVVQKMAGIEITDEMTSEQMEAMTGGEQLKAEGGYFGQ
IRNTKKSSQRLKDALLDHELALPLCLLMAQQRNGVVFLEGGEKHLKLVGKLYDQCHDTLV
QFGGFLASNLSTEDYIKRVPSIDILCNQFHTPHDAAFFLSRPMYGHQILSKYDELKKAEK
GNRQQQKVHKYVAACELVMSPVHEAVVSLHPPRVWDDLRPQFYATFWSLTMYDLAVPHNA
YDREVKKLQVQVKAIEENPDVPMNKKKKEKERCTALQEKLQEEEKKQLEHVQRVLHRLKL
EKDNWLLAKSTKNETITKFLQLCLFPRCIFSAIDAVYCARFVELVHQQKAPNFCTLLCYD
RVFSDIIYTVASCTENESRRYGRFLCCMLETVTRWHSDRAVYEKECGNYPGFLTIFRATG
FDGGNKADQLDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPCYPKVL
NLGQALECRVHKICLEEKEKRPDLYALAMGYSGQLKGRKVHMVPENEFHHKEQPVRSATT
ASQLNGPGTTAKPATNASKTEEGACEDTDRSKDKSQGAAKPVSKANSTAAKVTTSNGNGA
PNSTKAIKERDDKEKSGKEKKEKKEKTPGSTPETKGESRREKQRDERGAAGKEERAPREG
KEKTPKADRDKQKAEEKSSKEDNKAKAGNGEPKELSRERDTGAKESKTKEKGGDQSKEKG
GDRSAVSGSLKSPVPRSESAESERDHKRRKVDTHSSPSHSSSVKDNSNEPKDSASKHHIT
YNSVARSKSRERETDKKESENTRGRSKEKKTEDKDRKDRKRDHVTTDREMSLESKRRKDE
NGTNSSNKHSKSASPSSDSPVSADKEKTKRSKSSSKEKGESAKPERNSSGGKKESRHDKD
KPDKKEKRDSSGGKEEKKHHKSSDKHR
NT seq
4764 nt
NT seq
+upstream
nt +downstream
nt
atgtgtggtattttggggaagatggcgacacttatactgcctgctgattggatcaaaaac
tgggaaaaatctggaaaacatgagtttgtacaactatgtaagaatcttgcagacaaaacc
aatcatgacagcataataaaagatatacaggctgctttgtatgaactctgctggcatgtc
gtacaagggaacttcaagctggacctcgctgctagcgtcctcagtgacatgatggaactg
cgcgatgacatgccatccattttagcagatgttttcagtatactagacatagagaccagt
tctttggaggaaaaaaacaaacgcgaccattacacccagctagtgggagcatgtctgtta
tttgtgccagatgccatcctgaaggagagactggacccagagaccctggagtccctagga
ctcataaagcaagcccatcagttcaaccagaaaatcgtcaaaatcaagaccaagctattt
tacaagcagcagaagttcaacttgctaagggaagagaatgagggctatgccaagctgatc
actgagctgggccaagacctctcaggcaacatcactagccacgtcgtcctagagagcatc
aagtccctgataggatgcttcaacctggaccccaaccgcgttctggacatcatcctggag
gtgtacgagtgtcgctctgaccaggatgacttcttcctgcccctcatcaagtcatacatg
tgtgaacccctcaccctctgccacatcctgggcttcaagttcaagttcaaccaggagcct
aatgaagagacccctacgtcactctaccacattgctgctgccctcctcctccacaacctc
atagagctggaggacctctatgtgcacctgatgccactggatgccagcattgtagaggag
cacaagagagagatcacggaggccaagcagatcgcccgcaagctcaccatggtggtggtg
ccctccgagaagatggaggacaaggagagagagaaggagaaagaggaggagaagaacgac
aagcctccagataaccagaagctgggcttgctggaagcgctgctgaggatcggagactgg
caccatgcccagagcattatggaccagatgcctgccttctacgccacctctcacaaggcc
atcgccctggcactgtgccagctgctgcacctgactgtggagccgctgtaccgcagagcc
ggggtccccaaaggggccaagggctgtgtgatgaggcccctgaggaacaagcgggccccc
aggcctgccgagagctttgaggacttacgcagggatgtgttcagcatgctctgctacctg
gggcctcacctctcccacgaccccatcctctttgccaagatagtacgactgggcaagggc
ttcatgaaagagtaccaaaatgaggctagaaatgaccacatcaaggacaaaatggacaca
ttgctgagttgtttcctgagcattgcagaccaggtgctgctgccctcgctctctctaatg
gagtgtaacgcctgcatgtcagaagaactctggggcctcttcaaactgttcccttaccag
cacaggtaccggctatacgggcagtggaagaacgagacgtacaccagccacccactgctg
gtcaaggtcaaagctcagactgtggacagagctaaatacatcatgaagcgattgaccaaa
gagaatgtgaaaccatctgggcggcagatagggaagctgagccatagcaaccccaccatc
ctctttgactatatcctatctcagatccagtggtatgacaacctcatcggtccagtggta
gactccctcaaatacctcacctcactcaactatgatgtcatggcctattgcattattgaa
gcgctggccaatccagagaaagagaagatgaaacatgacgacactacgatatcctcctgg
cttcagagcctggctagtctgtgtggagcggttttcaggaaatacccaatcgagttggcc
ggcctcctccagtatgtgaccaatacgctgaaagcagggaagagttttgacctgctgatt
ctaaaagaggtggtgcagaagatggccggcatcgagatcacggatgagatgacatcagag
cagatggaggctatgactggaggggagcagctcaaagctgagggtggttactttggtcag
atccgtaacactaagaagtcgtcccagcgtctaaaggatgccctgttggaccatgagctg
gctctgcccctctgtctcctcatggcccagcaacgcaatggggtggtctttctagagggg
ggcgagaaacacctcaaactggtgggaaagctctacgaccagtgtcacgacaccctggtc
cagtttggtggcttcctggcctccaacctgagtactgaggactacatcaagcgtgttccc
tccattgacatcctgtgtaaccagttccacaccccccacgacgctgccttcttcctctca
cgccccatgtatggacatcagatcctgtctaagtatgatgagctgaagaaagctgagaag
ggcaaccggcagcagcagaaggtccataagtacgtggctgcgtgcgagctggtgatgtcg
ccggtgcatgaggctgtggtgtccctgcacccgccccgcgtctgggacgaccttcgaccc
cagttctacgccaccttctggtcgctgaccatgtacgacctggccgtgccacacaacgcc
tacgaccgcgaggtgaagaagctccaggtccaggtcaaggccatcgaggagaaccctgat
gtgcccatgaacaagaagaagaaggagaaggagcgctgcacggccctacaggagaagctg
caggaggaggagaagaaacagctggagcacgtccagagggtcctgcaccgcctcaaactg
gagaaggacaactggctcctcgccaaatccaccaagaatgagaccatcactaagttccta
cagctgtgtctgttccctcgctgtatcttctctgccatcgacgctgtgtactgcgctcgc
tttgtggagctggtgcaccagcagaaggctcccaacttctgcaccctgctctgctatgac
cgggtgttctctgacatcatctacacggtggccagctgcacagagaacgagtcacggcgc
tatggacgtttcctgtgctgcatgctggagactgtgacccgctggcacagcgaccgtgct
gtctacgagaaggagtgtggtaactacccaggcttcctgaccatcttcagagccacaggc
ttcgacggagggaacaaagccgaccagctggactatgagaacttcagacacgtggtgcac
aaatggcactacaagctgactaaagcatcagtccactgcttggagacgggggagtacacc
cacatccggaacatcctcatcgtgctgaccaagatcctgccttgttaccccaaagtgctg
aacctgggccaggcgctggagtgccgcgtccacaagatctgtctggaggagaaggagaag
aggccagacctctatgcgttggctatgggctattctggccagttgaaaggcaggaaggtg
cacatggtccctgagaatgagttccaccacaaggagcagccggtgcgtagtgccaccact
gccagccagctgaacggccctggcaccacagccaagcctgccaccaacgccagcaagacg
gaggagggagcctgcgaggacactgaccgatccaaggataaatctcagggggcggcgaag
ccggtgagcaaagccaacagcacagcggccaaagtgaccaccagcaatgggaatggtgct
cctaacagcaccaaagcaatcaaagagagggatgacaaagaaaagagtgggaaggagaaa
aaagagaagaaggagaagactccaggcagcactccagagacgaagggggagagccggcgg
gagaagcagagggacgagaggggagcagccggcaaggaggagcgggcgccacgcgagggt
aaggagaagacgcccaaggcagaccgggacaagcagaaggcggaggagaagagcagcaaa
gaggacaacaaagccaaggccggcaacggagagcccaaggagctgtccagggagcgcgac
actggagccaaggagtccaagactaaggagaagggaggagaccagagtaaggagaaggga
ggagacaggagtgctgtgtccgggtccctcaagtctccagttccccgatctgaatctgct
gaatctgagagggatcacaaaaggcgaaaagtcgatacccactcttcaccatcccactct
tcctctgttaaggacaatagcaacgaacccaaggactctgcatccaagcaccacatcacc
tacaattcggtcgcgcggtccaagagcagagagagggagacggacaagaaagagtcagag
aatacccggggccgttccaaagagaagaagaccgaagacaaagaccgaaaggacaggaag
agagaccatgtgaccactgaccgtgagatgagcctagaatccaaacgcagaaaagatgaa
aatggaaccaattcctccaacaaacacagcaagagcgccagtccctcctcagactccccg
gtctcggctgacaaagagaagaccaagaggtccaagtcctccagcaaggaaaagggagag
tctgctaaacctgagagaaactcttccgggggcaagaaggagtctaggcatgacaaagac
aaacctgacaagaaggagaagagggacagcagcggcggaaaggaagagaaaaaacatcat
aagtcctccgacaagcacagataa
DBGET
integrated database retrieval system
