Salvelinus fontinalis (brook trout): 129868671
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Entry
129868671 CDS
T11136
Name
(RefSeq) pre-mRNA-splicing factor RBM22-like isoform X1
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129868671
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sfon03041
]
129868671
Spliceosome [BR:
sfon03041
]
Complex B
Other components
Prp19-related factors
129868671
Complex C
129868671
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
zf_CCCH_4
Torus
zf-CCCH_2
RRM_occluded
Nup35_RRM_2
zf-CCCH
zf-CCCH_4
RRM_YTH1
zf-CCCH_10
RRM_3
zf-CCCH_12
zf-CCCH_PARP12
zf-C2H2_16
Motif
Other DBs
NCBI-GeneID:
129868671
NCBI-ProteinID:
XP_055798823
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All DBs
Position
13:40487227..40494108
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AA seq
423 aa
AA seq
DB search
MATSLGANIYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPG
TRMRFKKTEVCQTCSKMKNVCQTCLLDLEYGLPIQVRDTGLSIKDDVPKSDVNKEYYTQN
MEREIGNSDGTRPVGLLGKAPSSSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDTPEDKSITTLYVGGLG
DSITDSELRNHFYQFGEIRTTTIVQRQQCAFIQFATRQAAELAAEKSFNKLIIKGRRLNV
KWGRSQGARGKEGREREGVTEMGMKLEPVPGLPGALPLPPVDEDAPTNYFNLGPNSAPPV
MNISLPPPPGVAMPPPGFGPPMFHSMDPMVIPHPMGMRPPGHVHYPSQDPQRMGAHASRH
GGS
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggcgacatctttaggagctaatatttacaacagacaaaattgggaagacgcggacttt
cctattctctgccagacatgtcttggagagaatccttatattcgaatgaccaaggagaaa
tatggcaaggagtgcaagatatgtgccaggcccttcacagtgttccgatggtgtcctggg
acccgcatgcgattcaaaaagacagaggtgtgccagacgtgcagtaagatgaagaatgtc
tgtcagacgtgccttctggatctagagtatggcttgccaatacaggtccgagacactggg
ctgtcaatcaaggacgacgtgccaaaatccgatgtgaacaaggaatactacactcagaac
atggaaagagagatcgggaactctgatggtacacggccagtgggtctcctgggtaaggcc
cccagctctagtgacatgctgctgaagctagcccgcaccacgccttactacaagaggaac
agaccacacatctgctccttttgggtgaagggagaatgtaagagaggagaagagtgtccc
tacaggcatgagaagccaactgatcctgacgatcccctggcagaccagaacattaaggac
cgttactatggtatcaacgaccctgtggctgacaagctgctgaagagggcctccaccatg
cctagactggatacgccagaggacaagtccatcactacgctgtatgtgggggggctcgga
gactccatcactgactcagagctcaggaaccatttctaccagtttggggagatccggacc
accaccatcgttcagaggcagcagtgtgccttcatccagtttgccacccgtcaggctgca
gagttggctgctgagaaatccttcaacaagctcattatcaaaggtcgcagactcaacgtc
aagtggggcaggtcccagggagcaagggggaaggagggaagggagagggaaggggtgact
gagatggggatgaagctggagccggtacctggactgcctggagcgctacctctgccacct
gtggatgaagatgcccctaccaactatttcaacctgggccccaactcagccccccctgtc
atgaacatcagtctacccccaccccccggcgtggctatgccccctccaggctttggccca
ccaatgttccactccatggaccccatggtgataccccatcccatggggatgaggcctcct
ggccatgtccactacccctcccaggatccacaacgcatgggtgcacacgccagtcgtcac
ggaggctcctag
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