Salvelinus fontinalis (brook trout): 129868695
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Entry
129868695 CDS
T11136
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
sfon Salvelinus fontinalis (brook trout)
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfon03021
]
129868695
03036 Chromosome and associated proteins [BR:
sfon03036
]
129868695
Transcription machinery [BR:
sfon03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
129868695
Chromosome and associated proteins [BR:
sfon03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
129868695
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
SPT6_acidic
Tex_central_region
Spt6_S1
S1
S1_RRP5
HHH_9
HHH_3
SH2
Tex_N
MJ0788
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
129868695
NCBI-ProteinID:
XP_055798848
LinkDB
All DBs
Position
13:41289677..41355267
Genome browser
AA seq
1752 aa
AA seq
DB search
MSDFIDSEAEESEEEFEEKDLKPKKTQVFMDDEEEEEELNTEDQDEHGNLRGLIDDDVDE
DEEAEEKKSGGAGSGSDSEDEVRHRRKKRNYDDYLDDDDLDLIEENLGVKVKRRKKKYDR
VKLMDDDEDDEKDQIADEIFHGGDDDGEGELEEGETVDPPLRRHGERHDEEEEEEGEEES
DIDDFIVDDDGQPITKKRGKKFSGYTDAALQEAQEIFGGDFDFAEFDADGAYDQGEEEEE
DQDEEGWDRPKKQTKRRVGRKSIFEIYEPSELESSHMTDQDNEIRSTDMPERFQLRSIPV
KPAEDNELEEEAEWIYRNAFSTPTISMQESTDYLDRGTTTNFSRKGPSTIAKIKEALNFM
RNQHFEVPFIAFYRKEYVEPELNINDLWKVWQWDEKWCQLKSRKQNLTRLFRRMQSHQYE
QISADPDKPLADGIRPLDTADMERLKDVQSIDELSDVYSHFLLYYGRDIPKMQNTAKAAN
KKKKLRKIKEVNEDGEEEEVEVEEEEEQKGPDLKLASRRDMYSICQSAGLDGLAKKFGLT
PEQFGENLRDSYQRHETEQFPAEPVELAKDYVCSQFNSPEAVLEGTRYMVAMQISREPLV
RHVLRQTFQERAKININPTKKGKKDMDEAHFGYSFKYLKNKPVKELNGEQFLKMCQAEEE
GLLTIDICIDLLGVKGFAGDQTYFDEIKQFYYRDEFSHQVQEWNRQRTLAIERSLTQFLY
PQMAKELKNKLIAEAKDNIIKSCCRRLYNWLKVAPYRPDQQAEEEDDDLMDESQGKGIRV
LGVAFADSRDTPVFCSLINGEGEVVDFLRLPYFLKRRNAWREDERDKKLQDIENLKKFLI
SKKPHVVAVAGENRDAHMIMEDIKRTVSELEQESSLPAVGVELVDNELAMLYMNSTKSQA
DFRDYPPLLRQAVSVARKIQDPMVEYAQVCSTDEDILCLKLHPLQEHVVKEDLLNALYCE
FINRVNEVGVDVNRAISHPYTQSLVQFVCGLGQRKGSHLLKILKQNNTRLENRTQLVTMC
HMGPKVFINCAGFIKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAE
DANPAGALEEILENPERLKDLDLDAFAEELERQGYGNKGITLYDIRAELSCRYKDLRVPY
RAPNTEEVFNLLTKETPETFYIGKLITSVVTGIAHRRPQGESYDQAIRNDSTGLWQCPFC
QQDNFPELSEVWNHFDSGSCPGQAIGVRSRMDNGVQGFIPTKFLSDKVVKHPEERVKVGM
TVHCRIMKIDIEKFNVDLTCRTSDLMDKNNEWKLPKDTYYDFDAETEDTKAEEELKKKQQ
RTTYIKRVIAHPSFHNINFKQAEKMMESMDQGDVVIRPSSKGENHLTVTWKVADGIYQHV
DVREEGKENAFSLGHTLWIYTEEFEDLDEITARYIQPMAAFARDLLGHKYFQDCNGGDKK
KMEELLIRCKKEKPAFIPYFVSACKDLPGKFILGYQPRGKPRVEFVTISPDGFRYRSQMF
PTVNGLFRWFKDHFQEPVPGITPSSSSRTRTPASVNATPANINIADLTRAVNALPRNMTS
QMFSAIAAVTGQGQGQNANTTPAQWDSSQYGYTGGSSGGGGGNTSAYHVFATPQQPMSTP
MMTPSYSYTTPSQQTMGTPQYPSSTPLSSHGHTQSSQRQGHSSSNSHHGHSSNTPSSSTS
SRGRTPQQPKSSGSTAVDWAKMAEQWLQDKEAERKKQKTPRMTPRPSPSPMIESTPMSIA
GDATPLLDEMDR
NT seq
5259 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacttcatcgacagcgaggctgaggagtcagaggaggaatttgaggagaaagac
ctgaagcccaaaaagacccaggtgtttatggatgatgaggaagaggaggaagagttaaac
acagaggaccaggatgagcacgggaacctgagggggctcatcgatgatgatgtggatgaa
gatgaagaagcggaagaaaagaagagcggaggagcgggtagcggcagcgactcagaggat
gaagtcagacacaggcgcaagaaacgcaactatgatgactacctggatgatgatgacctg
gacctcattgaggagaacttgggggtcaaagtcaagaggaggaagaagaagtatgaccgc
gtgaagctgatggatgatgatgaagatgacgaaaaggaccagatagcagatgagatcttc
cacggaggagacgacgacggagagggggagctggaggagggagagaccgtcgacccgccc
ctccgtcgccatggtgaacgccacgatgaagaggaggaagaggaaggagaggaggagtca
gatattgacgactttattgtggatgacgatggccagcccatcacaaagaagagaggcaaa
aagttctcaggatacacggacgcagccctccaggaggcccaggagatcttcggcggtgac
tttgactttgcagagtttgatgccgacggagcatatgaccagggtgaggaagaggaggag
gaccaggatgaagagggctgggaccggcccaagaagcagacgaagaggagagtggggagg
aagagcatcttcgagatctatgagcccagcgagctggagagtagtcacatgacagaccag
gacaacgagatccgctccacagacatgccagagaggttccagctgcgctccatcccagtg
aagcctgctgaggataatgagttagaggaagaggcagagtggatctacagaaatgccttc
tcaacccccaccatctccatgcaggagagtacagactacctggacagagggaccaccaca
aacttcagcaggaaaggccccagcaccatcgctaagatcaaggaggccctcaacttcatg
aggaaccagcactttgaggttccgttcatcgcgttctacaggaaggagtacgtggaacca
gagctcaacatcaacgacctgtggaaggtctggcaatgggacgagaagtggtgccagctg
aagagcaggaagcagaacctgacacgactgttccggaggatgcagtcacaccagtatgaa
cagatctctgccgaccctgacaaacctctagctgatggcatcagacccctggacacggct
gatatggagagactgaaagacgtccagtccatagatgagctgagcgacgtgtacagccac
ttcctgctgtactacggcagagacatccccaagatgcaaaacacagccaaggccgccaat
aagaagaagaagctgaggaagatcaaggaggttaacgaggacggtgaggaggaagaggtg
gaggtggaggaggaggaagagcagaaggggccagacctgaagctggcatctcgtagagac
atgtacagcatctgtcagagcgcagggctcgacggcctggctaagaagtttggtctgacc
ccagagcagtttggggagaatctgagagacagctaccagcgccacgagacagagcagttc
cctgccgagcctgtagagctggccaaagactacgtctgcagccagtttaacagtcccgag
gctgtgttggaggggactcgttacatggtggccatgcagatttccagggagcctctggtc
agacacgtcctcagacagaccttccaggagagagccaagatcaacatcaatcccaccaag
aaaggaaagaaggatatggatgaggcccattttggctactccttcaagtacctgaaaaac
aagccagtgaaggagctgaacggagaacagtttttaaagatgtgccaggctgaggaggag
ggccttctcaccattgacatctgcatcgacctcctaggggtcaaagggtttgcaggtgac
cagacgtactttgatgagatcaagcaattctattacagagatgagttcagccaccaggtg
caggagtggaacagacagaggaccctggccatcgaacgctccctcacacagttcctctac
cctcagatggccaaggaactcaagaacaaactcatcgcagaggccaaggacaacatcatc
aagtcgtgttgcaggaggctgtataactggctgaaggtggctccctacagaccagaccag
caggcggaggaggaggatgatgatctgatggatgagagtcaaggaaaaggcatcagagtc
ctgggagtggcctttgcagacagcagagacacgccagtgttctgttctctgatcaacgga
gagggagaggtggtggacttcctccgtctgccttacttcctgaagaggaggaatgcatgg
agggaggacgagagggacaaaaagctccaggacattgagaacctaaagaagttcctgatc
agtaagaaacctcacgtggtggctgttgccggggagaatagagatgcccacatgataatg
gaggacattaagaggacagtgagtgagttggagcaggagtcttctctacctgctgtggga
gtggagctggtggacaacgaactggccatgctttacatgaacagcacgaagtctcaggct
gacttcagggactacccgccgctactgcgtcaggccgtgtccgtagccaggaagatccag
gatcccatggtggagtacgctcaggtctgcagcacagacgaagacatcctctgcctcaaa
ctacaccctcttcaggagcatgtagtaaaggaggacctgctgaatgctctgtactgtgag
tttataaaccgggtcaacgaggtgggggtggatgtgaacagggccatatctcacccctac
acacagagcctggtccagttcgtctgtggcctcggacaaaggaagggatcgcacctgctc
aagatcctaaaacagaacaacactcgtttggagaacaggactcagctggtcaccatgtgt
cacatgggccccaaggtcttcatcaactgtgccggcttcatcaagatagacaccgcctcg
cttggagacagtacggactcatacatcgaggttctggacgggtccagggtgcacccggag
acgtatgagtgggccaggaagatggcggttgacgctctggaatacgatgagtccgcggag
gacgccaacccggccggtgcgctagaggaaatcctggaaaacccggagcgactcaaagac
ctggacctggatgccttcgctgaggagctggagagacagggttacggtaacaagggcata
acgctgtatgatatccgtgctgagttgagctgcaggtataaggacctgagagttccctac
agagctcctaacaccgaggaggtgtttaacctgctcaccaaagagacacctgagacgttc
tatataggtaagctgatcaccagtgtcgtgacaggcattgctcaccggcgcccacaaggg
gagagttatgaccaggccatcaggaacgactctaccgggctgtggcagtgccccttctgt
caacaggacaacttccctgaactcagcgaggtgtggaaccattttgacagtggatcgtgt
ccaggccaggccatcggcgtgaggtctcgaatggacaacggtgtccagggcttcatcccc
accaagttcctcagtgacaaggtggtcaagcatcctgaggagagggtcaaggtgggtatg
acagtacactgtcgcatcatgaagattgacattgagaagttcaacgtggacctgacgtgt
cgtacgtctgacctgatggataagaacaacgagtggaagcttcctaaggacacctactac
gactttgacgcagagacagaagacactaaggcagaggaggaactcaagaagaagcaacag
agaaccacctatataaaacgtgtgatcgcccatccatcgtttcacaacatcaacttcaag
caggctgagaagatgatggagtccatggaccagggagatgttgtaatcaggcccagcagc
aagggagaaaaccacctcactgtcacatggaaggtggctgatggtatctaccagcatgtg
gatgtgagagaggagggcaaggagaacgccttcagcctgggacacacactttggatctac
acagaggagtttgaggatcttgatgagatcacagctcgttatattcagccaatggcagcg
tttgctcgcgacctcctgggacataagtacttccaggactgtaacggaggggacaagaag
aaaatggaggagttgttgattaggtgtaaaaaggaaaagcctgcgttcatcccctatttt
gtctcagcctgtaaagacctgccagggaagttcatacttgggtaccaacctcgcggaaaa
ccacgtgttgagtttgtgaccatcagtcctgacgggttccgctaccgctcccagatgttc
cccacagttaacggactgttccgctggttcaaagaccacttccaggaaccggtaccaggc
atcacccccagcagtagtagtcgaacacggacacctgcctctgtcaacgctacaccagct
aacatcaacatcgcagacctgacgcgagctgtcaacgctctcccgcggaacatgacctct
cagatgttcagtgccatcgccgcggtgacagggcagggccagggccagaatgccaacacc
acgcccgcccagtgggactccagccaatacggttacaccgggggcagcagcgggggtggg
ggaggcaacacctcagcctatcacgtatttgcaacgccccagcagccgatgtcgacgccc
atgatgacccccagctactcgtacaccacccccagccagcagaccatgggtacgccccag
tacccctcctccacccccttgtcctcccacggacacacacagagcagccaaaggcagggc
cacagcagcagcaacagtcaccatggacactcgtccaacacaccttcctcctccacctct
tccagaggacgcacgccgcagcagcctaagtcgagcggcagcacggcggtggactgggcc
aagatggcggagcagtggctccaggacaaggaggcggagaggaagaagcagaagaccccc
aggatgaccccacggccttcccccagccccatgatcgagagcaccccaatgtccatcgct
ggagacgcaacaccccttctggacgagatggaccgatag
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integrated database retrieval system
