Salvelinus fontinalis (brook trout): 129868832
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Entry
129868832 CDS
T11136
Name
(RefSeq) protocadherin-1-like isoform X1
KO
K16498
protocadherin delta 1
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
129868832
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sfon01009
]
129868832
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sfon04515
]
129868832
Protein phosphatases and associated proteins [BR:
sfon01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
129868832
Cell adhesion molecules [BR:
sfon04515
]
Cadherins
Protocadherins
129868832
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
PepSY
Fibulin_C
PDGLE
Glyco_hydro_26
Motif
Other DBs
NCBI-GeneID:
129868832
NCBI-ProteinID:
XP_055799085
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All DBs
Position
13:complement(48430164..48527415)
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AA seq
1190 aa
AA seq
DB search
MELHLGAVLLWVLVLDCCGWAEAGILYRVQEEQPPSTLIGSLASDQGLPDSGHLYKLEVG
SPYLRVDGKTGDIFTTEIPIDRETLRDCRSIVRGKPCFLEFEVSVTDLIHNQSPRLIEGR
IEVQDINDNTPQFPSPVLTISVPENTHLGALFSIPLATDRDSERNGVADYALTAGPDAAT
LFGLQVAEDRGEKLPQLIVLGSLDRELKDSYDLTIKAVDGGNPQRYSSALLRVVVADAND
NAPKFEKATYEAEVSENSPVGHSVLQVKANDSDMGPNGEIEYTLHQALDPVPKLLRIDRS
NGIIYVKGPLDREEISDLTFYVVARDKGPQPKSSKTFVTIQVTDQNDNSPAVEIRGIGLV
THSDGVANISEDMPVGTAVALVQVSDRDEGENAVVTCVVAGDVPFQLRPASDSSTNKRKY
FLQTTTPLDYERVREYRVEIVAVDSGNPALSSTNSLKVQVTDVNDNSPVFSPTLFEVVFA
EENQPGDKVVDVVATDADSGTNAELVYSIVADTSTRGLFEIDPDSGEVRARSSLDREHKE
RYEFRVTASDKGSPSHRGTATVVVKVLDRNDNDPKFMLSGYSFSVLENMPPLSAVGMVTV
LDMDQGENARVQLSVEPDGGKFVIQNGTGTILSSISFDREKESSYTFRLKAVDGGEPPRS
SYVGVTINVLDENDNDPVVTKPSNSSFRLLSPLATPESRVELVEAEDLDTGPNAEMVFSI
TGGNPYELFSISSTTGEITLAKELTRKHGGLHRLVVRVSDAGKPTRHATAMVHIYVNETI
ANISLVEALVGHSLYTPLETDIAGDPDYGLAAQRSNIVYGSLAGVAGVVLVIVVVVFIRH
RIQRETKSGYQAGKKENKDLYAPKQGPKNGKGKRGRKGKPSKSPKPLGEEEEVSLQKSLK
FNLDGVNDSPRIHLPLTYPPGSPDLGRHYRSNSPLPSIQLQAQSPSASQKHQAVQDLPAT
NTFVGTGGDDNSTGSDQYSDYSYKASQPKYNSKQLPHRRVTFSTANPVQDLQDASQHSYY
DSGLEESETPSSKSSSGPRIGPLTLPEDHYERTTPDGSIGEMEHPENDMRSIPDVAMTGN
CTQECSELGHSDACWMPGQPSPVRKTRNPPKLSTFVPYQERGSLGRLANGSARLGGEEHR
AHLPPSRSAYSNSGHAPSQDFPLEEVPLSVATEFPSTSPPSHTPKREIYL
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggaactgcacttgggagcagttctgttgtgggtcctggtgttggactgctgtggttgg
gctgaggctggtatcctctaccgagtccaggaggagcagccccccagcacgctgataggc
agcctggcatcagaccagggcctgccagactctggtcacttgtacaagctggaggtgggc
tctccgtacctgcgtgtggatgggaagacaggggacatcttcaccacagagatccccata
gacagggagacactgagggactgccgcagtattgtcaggggcaagccctgcttcctggag
ttcgaagtgtccgtcacagacctaatccacaaccagagccccaggctcattgagggccgc
atcgaggtccaggacatcaacgacaacacgccacagttcccctcccccgtgctcaccatc
tctgtcccagaaaacacccacttgggcgctctgttctccatccccctggccacagacagg
gactcagagaggaacggggtggccgactacgccctcaccgctgggccagacgcggcaacg
ctcttcggcctgcaggtggcggaagacaggggggagaagctgccccagctcatcgtcctg
ggcagtctggaccgggagctcaaagactcgtatgacctgacaatcaaagctgtggacgga
ggtaacccccagcgctatagcagtgccttgctgagagtggtggttgctgatgctaacgac
aatgctccaaagtttgagaaggccacgtacgaggcagaggtttcagaaaacagccctgtg
ggacactctgttttgcaggtgaaagccaatgactctgacatgggccccaatggagagata
gaatacacactacaccaggcattagacccagtgccaaaactcctgagaattgatcgctcc
aatggcatcatctatgtcaaagggcccttggatcgggaagaaatcagcgatttgacattc
tacgtagtggccagggacaaaggtccccaacccaaaagctccaagacctttgtgacaatc
caggtgactgaccagaacgacaattcccctgctgtggagatccgtgggatcggcctggtg
acccacagtgacggtgtggccaacatatcagaggacatgccagtgggcacggcggtggcc
ctcgtccaggtgtctgacagggacgagggggagaatgcagtggtcacctgtgtggtggcg
ggggacgtgcccttccaactgcgcccggctagtgactcgtccactaacaagaggaagtac
tttctgcagactacaacccccttggactatgagagggtcagggaataccgtgtggagatt
gtggctgttgactctggcaacccagctctttccagtactaactcattgaaggtgcaggtg
actgatgttaacgacaactccccagtgttttccccaaccctgtttgaggttgtgtttgca
gaggagaaccagccaggggacaaggttgtggacgtggttgccacggacgctgatagcgga
actaacgccgagctggtctatagcatcgtagcagacacatctaccaggggcctgtttgag
attgaccctgattcaggagaggtgagggcacggagctcactggacagagagcataaagaa
cgctatgagttccgggtcactgcgtccgataaaggttctcccagtcacagaggaacagcc
acggtcgtggtcaaggtgctggaccgcaatgacaacgaccccaagttcatgctaagtggc
tacagcttctctgttctggagaacatgcccccactcagtgccgttggcatggtgactgtg
ctggatatggatcagggagagaacgccagagtgcagctctctgtggagccagacggaggg
aagtttgtgattcagaatggaacaggaaccatcctgtccagcatctcctttgaccgggag
aaggagagcagctacaccttccgcctgaaggccgtagacgggggagagcctcccaggtcc
tcctatgtaggcgttaccatcaatgtcctggatgaaaacgacaatgatcctgtggtcacc
aagccctccaactcctccttcagactcctgtcccctctagctaccccagaaagccgtgtg
gagctagtggaggctgaagacctggacactgggcccaatgcagaaatggtcttcagcatc
actggaggaaacccttatgaactcttcagcatctcctccactactggggaaatcaccctg
gccaaggagctgacccggaaacatggtgggctccatcgcctggtggtgagggtgagtgat
gcgggcaaacccacacgccacgccactgccatggtgcacatctacgtcaatgagaccatt
gctaacatcagcctggtggaagcactggtgggacacagtctctacacccctctggagaca
gacattgctggtgaccctgactacggcctggcggcccagcgcagtaacattgtgtacgga
agcctggcgggagtggcgggcgttgtcttggtgatcgtagtggtggtgtttatccgccac
cgcattcagcgggagacgaagagcggctaccaggctggcaagaaggagaacaaggacctt
tacgcccccaagcaggggccaaagaatggcaaaggcaagaggggcaggaaaggaaagccc
tccaagtcccctaagcccttgggagaggaggaggaggtcagtctccagaagagtctcaag
ttcaacctggatggggtcaacgacagccccaggatccacctgcccctgacatacccccca
ggtagccctgaccttggcagacactaccgctccaactctcccctaccatccatccagctg
caggcccagtctccctcggcctcccagaagcaccaggcagtccaggacctccctgcaacc
aacaccttcgtagggactggaggagacgacaattcaacaggctcagaccagtactcggat
tatagctacaaggccagccagccaaagtacaacagcaagcagctcccccatcgcagagtg
acattctccacagccaatccggtgcaggatctgcaggatgcatctcagcacagttactat
gacagtggcctggaggaatccgagacgcccagcagtaagtcatcatcaggcccccgcatc
gggccactgaccctgcctgaggaccactacgagaggaccaccccggatggcagcatcggg
gaaatggagcaccctgaaaacgatatgcgatccattcctgatgtggccatgacggggaac
tgtactcaagagtgcagcgagctgggccactcagacgcctgctggatgcctgggcagccc
tccccagtgcgcaagaccagaaacccccctaaactctccaccttcgtgccttaccaggag
agaggcagcctgggccgcttggccaacgggagcgccaggctgggtggagaggagcaccga
gcccaccttccaccctcccggagtgcctattccaacagcggccacgccccaagtcaggac
tttcccctggaggaggtgcccctgagcgtggccaccgagttcccgtccacctcccctcct
agccacacccccaaacgagagatctacctgtga
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