Siminovitchia fortis: QNH23_07765
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Entry
QNH23_07765 CDS
T09068
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sfor
Siminovitchia fortis
Pathway
sfor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QNH23_07765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfor03019
]
QNH23_07765
Messenger RNA biogenesis [BR:
sfor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QNH23_07765
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
ODP
Motif
Other DBs
NCBI-ProteinID:
WHY83259
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Position
complement(1488545..1490215)
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AA seq
556 aa
AA seq
DB search
MTKVKNDSIKIIPLGGVGEIGKNMYVIEIDTDIFIIDAGLKFPENEMLGIDIVIPDTTWL
EEQKDRIKGIFLTHGHEDAIGALPYVLQKINAPVYGTKLTIALAKEKLKEFGLKASSRFH
TVKSNSRIKFERTVITFFHTTHSIPDSVGICIQTSEGKIVHTGDFKFDQAATELYQAEIG
KMASIGDSGVLCLLSDSTEAENPGFTTSEAVTERELSNTFHTAQGRIIVACFASNFIRIQ
QALDAAYEDGRKVAVVGKSIERSFEIALKLNYLSLASDELMVPISDIPKYEDNEIVIIST
GTMGEPFEALQKMARQNHKQINIKKGDTVLITATPSPGLETFMYKTIDLLYRAGAVVSTP
YFKIHVSGHGSQEDLKLMLNLMKPKFFIPIQGEYRMLFEHAKLAEQTGLSKDQIFIPNNG
EIVEYKDGKMSVGGKVTAGNVLIDGIGIGDVGNIVLRDRKLLSQDGIFTVVVTLDKKNRK
IASGPEIISRGFVYVRESEKLIDESTNIVRSIVEQAISEGSFDWSGIKQDIRDRLNQFLF
DQTKRRPMILPIIMEV
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
ttgactaaagtgaaaaatgacagcataaaaataattccgcttggaggagtgggagaaata
ggaaaaaatatgtatgtcatcgaaattgatacggatattttcatcatcgatgccggcttg
aagtttcccgaaaatgaaatgctcggcatcgatattgttataccggatacaacgtggctg
gaggaacaaaaagatcgtattaagggaatatttttgacgcacggacatgaagatgcaata
ggggctctcccttatgttttgcaaaaaataaatgctcctgtttacggtacgaaattgaca
atcgcacttgcgaaagagaaattgaaagaattcgggctcaaggcatcaagccgttttcat
accgttaaatccaattcaaggataaaattcgaacgcaccgtcatcacatttttccataca
acccacagcatcccagattctgtcgggatttgcatacaaacatcagaaggaaaaattgtc
cataccggcgattttaagttcgatcaggcagccacggaattataccaggccgagattgga
aagatggcaagcatcggggattccggggtactctgccttttatcggacagcaccgaagcg
gaaaacccgggctttacaacctcggaagctgtcacggaaagggaattgtccaatacattc
catacagcacaaggaaggattatcgttgcctgttttgcatccaatttcataaggatccag
caggcactggatgccgcgtatgaggacgggaggaaagtggcagttgtcggaaaaagcata
gaacggagctttgaaatcgcccttaagctgaactacctttccctggcttcagacgagctt
atggtgccgataagtgacatcccgaaatacgaggacaatgaaattgtcatcatttcgaca
ggaacaatgggcgagccgtttgaagccctgcaaaaaatggccaggcaaaatcataagcag
atcaatatcaaaaaaggcgacactgtgctgattacagccacgccttcccccggattggaa
acattcatgtataaaacgattgatcttttatatagagcgggagcagttgtcagcacgcca
tactttaaaatccatgtttcgggccatggcagccaggaagacctgaagcttatgctcaat
ttgatgaagcctaaattttttattccgatccagggagaataccggatgctgtttgagcat
gcaaagctggccgaacaaacaggcttaagcaaagatcagatatttatcccgaacaatggt
gaaatcgttgaatacaaagatggtaaaatgtccgtcggcggtaaagtaactgccggaaat
gtattgattgacggaatcggcatcggggatgtcggaaacatcgtcctgcgggatcgcaag
ctgctctcacaggatggaattttcactgtcgttgttacgcttgataagaagaacaggaaa
attgcctcggggcctgagatcatttcccgcggttttgtatatgtaagggaatcggagaag
ctgatagatgaatcaacaaatatcgtccggtcgattgttgaacaagccatttccgaaggc
tcattcgactggtcgggaatcaagcaggatatccgggacaggctgaatcaatttttattt
gaccagaccaaacggaggccgatgatactgccgatcatcatggaagtttaa
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