Siminovitchia fortis: QNH23_15520
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Entry
QNH23_15520 CDS
T09068
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sfor
Siminovitchia fortis
Pathway
sfor03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sfor00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QNH23_15520 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfor03021
]
QNH23_15520 (rpoC)
03400 DNA repair and recombination proteins [BR:
sfor03400
]
QNH23_15520 (rpoC)
Enzymes [BR:
sfor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QNH23_15520 (rpoC)
Transcription machinery [BR:
sfor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QNH23_15520 (rpoC)
DNA repair and recombination proteins [BR:
sfor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QNH23_15520 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
DHC_N2
NQRA_N
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
WHY81283
LinkDB
All DBs
Position
complement(3067741..3071337)
Genome browser
AA seq
1198 aa
AA seq
DB search
MLDVNNFEYMKIGLASPDKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRALEEIIYFASYVVTDPGDTTLEKKQLLSEREYRAYREKYGSSFNAGMGAEAIKKLLQ
DVDLDKEVEILKEELKTAQGQRRTRAIRRLEVLEAFRHSGNHPDWMVLDVLPVIPPELRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMYQCGLPKE
MALELFKPFVMKELVEQGLAHNIKSAKRKIERVHPEVWDVLEEVIREHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPRDGKPVVTPSQDMVLGNYYLTLEREGAAGEGMVFGNADEALLAYHNGYIHLHSRIAIH
VDSLPNERFSEEQRKKLLVTTMGKIIFNEILPHSFPYINEPTRENLEQNTPEKYFVDTTE
NVAEFIKKQPLVKPFKKKILGNIIAEIFKRFQITETSKMLDSMKDLGFKYSTKAGITVGV
SDIVVLAEKETILEEAQTKVDNVLKQFKRGLITDEERYDRVISIWSSAKDEIQDKLMESL
ENLNPIYMMSDSGARGNPSNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGTDRGLLVSALKDGTEEIESLE
ERLIGRFTRKKIVHPETGDIIINENTLITEDTAKEIVNAGIEKVWIRSAFTCNTRHGVCK
KCYGRNLATGSVVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARNPKGQAVISEISGVVTAINEGRDRQHEIVIQGEIESKTYNAPYTARLRVAVNDRVER
GQELTEGSIDPKELLRAKDVAAVQEYLLLEVQKVYRMQGVEIGDKHIEVMVRQMLRKVRV
TDAGDTDVLPGTLLDIHQFTDANKKVLLEGNQPATGRPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMQRYRRAGAVLKREEDDAVNVE
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
ttgctggatgtaaataatttcgagtatatgaaaatcggcctcgcatcgccggataagatc
cgctcatggtcttttggcgaggttaaaaagccggaaacgattaactatagaactttaaaa
cccgagaaggacggtcttttctgtgagcggattttcggaccgacaaaagactgggaatgc
cattgcggaaaatacaaacgtgtacggtataaaggagtcgtttgtgaccgctgcggcgtt
gaagtgacgagggcgaaagtccgccgtgagcgaatggggcacattgagcttgctgcccct
gtctctcacatttggtacttcaagggaattccgagccggatgggtcttttattggatatg
tccccccgcgcattggaagagatcatttatttcgcttcttacgtagtgacagacccgggc
gacactacacttgagaagaaacagcttttatctgaaagggaatatcgtgcttatcgtgaa
aagtacggttcatctttcaatgcgggaatgggagcggaagctattaaaaagcttttgcag
gatgtagatcttgacaaagaagtcgagattttgaaagaagagctgaagacagcgcagggc
cagcggcgtacgcgtgccatcagaaggcttgaagtgctggaagcattccgccactccgga
aaccatccggattggatggtgctggatgtccttccggtcattccgccggaattacgcccg
atggttcaactggaaggcggccggttcgctacatcggacctgaacgacttgtaccgtcgt
gtcattaaccggaacaaccgcctgaaaaggctcttggacctcggagcgcccggcatcatt
gtccaaaatgaaaagcgtatgcttcaggaagctgtcgatgctctcatcgataatggacgg
agagggcgcccggtgaccggacccggcaaccgtccgctcaaatccctttcacacatgctg
aaaggaaagcaagggcgcttccgccaaaacttgcttggtaaacgggtcgattattcaggc
cgttccgttatcgtcgtcggaccgagccttaaaatgtatcaatgcggccttccgaaagaa
atggcattagaactgttcaagccgtttgtcatgaaggaactggttgaacaaggccttgct
cacaatattaagagcgccaagcgtaaaattgagcgtgttcatcccgaagtttgggatgtg
cttgaagaagtcatccgcgaacatccggtgctcctaaaccgtgcaccgacattgcacagg
ctgggaattcaggcatttgagccgactcttgtcgagggaagggcgatccgccttcacccg
cttgtatgtacagcttataatgcggactttgacggcgaccaaatggctgtccatgttccg
ttatccgccgaagcccaggcggaagcaaggctgctgatgctggctgcgcagaacatctta
aacccaagggacggcaaaccggtcgttacaccttcccaggatatggtcctcgggaactat
tatctgacattggagcgtgaaggcgctgcaggcgagggcatggtcttcggcaatgcagat
gaggcgctgctcgcataccataacggatatatccacctgcattcccggattgcgattcat
gtggattctctgccaaatgagagattttctgaggagcagcggaagaaattgctggttacg
accatgggtaaaatcattttcaatgaaattttgcctcattcgttcccatatatcaatgag
ccgacaagggagaatcttgaacaaaatacgccggagaagtattttgttgatacaacagaa
aacgttgcggaattcattaaaaagcagccgcttgttaaaccattcaaaaagaaaattctt
gggaatatcattgccgagatttttaaaaggttccaaatcaccgagacttcaaaaatgctc
gacagcatgaaagatcttggattcaaatattcgactaaagcagggattacggtcggagta
tccgatattgttgtacttgcggagaaagaaacaatccttgaggaagcccagacaaaggtt
gacaatgtcctgaagcagttcaagcgggggctgattacagatgaagagcgctatgatcgt
gtcatttccatctggagttccgcaaaggatgaaattcaggataagctgatggagtccctg
gaaaatcttaatccgatttacatgatgagtgattccggtgcgcggggtaacccatccaac
tttacacagttggcgggtatgcgcggactcatggccaacccggctggacggatcatcgaa
cttccgatcaaatcaagcttccgggaaggattgacagtactcgagtactttatctccacc
catggagcgcgtaaaggattggcggatacagcactgaagacagccgactcaggttacctg
acaagaaggctggttgacgttgcgcaggatgtcattgtccgtgaagatgactgcggtaca
gaccgaggactccttgtttcagcgcttaaagacggtacagaagaaatcgagtctttggaa
gaaaggctgattggccgctttacccgcaaaaagatcgttcatcctgaaacaggggacatt
atcattaatgagaatacgcttatcacggaagatacagcgaaggaaatcgtcaacgcagga
attgaaaaagtatggatccgctctgcgttcacatgtaacacccgccatggcgtatgtaaa
aaatgctacggccgaaacctggcaaccggttcagtagtggatgtcggggaagcggtggga
atcatcgccgctcaatcaatcggagagccgggtacccagcttacgatgaggaccttccat
accggaggggttgccggggacgatatcacgcagggtcttccgcgtattcaggaattgttc
gaagcccgtaaccctaaaggccaggctgtcatttccgaaatcagcggcgtggtcaccgcc
atcaatgaaggcagggaccgccagcatgaaattgtcatccaaggcgaaattgaaagcaaa
acatataatgccccatacacagcccgtctgcgtgtagcagtgaatgaccgggtggagcgc
gggcaggaattgaccgaagggtccatcgatccgaaggaattgctgcgtgccaaagatgtg
gcggccgtacaagagtatcttttacttgaagtgcaaaaggtttaccggatgcagggtgtt
gaaattggcgacaagcatatcgaagtgatggttcgccagatgctgcggaaagtgagagtc
acggatgcaggagacaccgatgtactgccgggaacattgcttgacattcaccagtttacg
gatgcgaacaaaaaagtgctgcttgaaggaaatcagccggcaaccggacgtccggtattg
ctcggtattacaaaagcatcgcttgagacggattccttcctgtcagcagcatcattccag
gaaacaacacgcgtgttgaccgacgctgccatcaaaggcaagcgggatgagctgctcggc
ctgaaagagaacgtcattatcggaaaactggttccggccggaaccggaatgcagcgctac
agaagagcgggcgccgtattgaagcgagaagaagacgatgcagtcaacgtagaataa
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