Siminovitchia fortis: QNH23_15780
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Entry
QNH23_15780 CDS
T09068
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sfor
Siminovitchia fortis
Pathway
sfor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sfor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QNH23_15780 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfor03400
]
QNH23_15780 (mfd)
Enzymes [BR:
sfor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QNH23_15780 (mfd)
DNA repair and recombination proteins [BR:
sfor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QNH23_15780 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
UB2H
IstB_IS21
DUF3638
Motif
Other DBs
NCBI-ProteinID:
WHY81327
LinkDB
All DBs
Position
complement(3124002..3127526)
Genome browser
AA seq
1174 aa
AA seq
DB search
MHGLRDLILQQSELQSVIAGVNEGIREQLVAGLSGSVRALFVAAAAKETRKSLIVVTHNL
LQAQKLYEDLLQLVDEDQLFLYPANELIASELGVASPELRSQRIEALNYMVSGRRGIFVI
PMAGLRKTLPPSDVWKKLQLHIETGSELDLDKQLPLLVQMGYARVDMVSAPGEFSIRGGI
LDIYPLTEADPIRIELFDVEVDSIRTFSIEDQRSKEKLAHVLIGPATESPVDAGGLSHAA
DKLEKSLGSSLKKIKKDLTKEQLMQNIGADIEQMRNGQKPEQFFKYMKLAYDPAESLLDY
VSRDSLLILDELSRIQEMNERLEKEEAEWFTSVLEHGEVTHDLEIAHSLNGLLADTSLPR
IYLSLFLRHIPNTSPQNIANVPCKLMQNFHGQMHLLASEVERWRKNGMSVIFLAPDEERS
QKMQSVLRDYGVEAAIADDPGKFAGTQIVNGALNTGFELPSLKLAVVTEEEVFNKKTRKM
KRRQKLSNAERIKSYSELNPGDYVVHVNHGIGKYLGIETLEIKGVHKDYLHISYQGNDTL
YVPVDQIDLVQKYVGSEGKEPKMYKLGGNDWKRVKKRVESSVKDIADELIKLYAEREATK
GYAFSPDSDMQREFELSFPYQETEDQLRSIAEIKRDMERERPMDRLLCGDVGYGKTEVAI
RAAFKAIMDGKQVAILVPTTILAQQHFETIKERFNGYPINISLLSRFRTKKEQTETAKGL
KNGTVDLVIGTHRLLSKDIKFADLGLLIVDEEQRFGVSHKEKIKQLKTNVDVLTLTATPI
PRTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYNGTFVKEAIERELARDGQVYFLYNRV
EDIERKAEEISMLVPDARVAYAHGQMGESELEAVILSFLDGEFDVLVTTTIIETGVDIPS
VNTLIVYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEIAEKRLQAIKEFTEL
GSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERRGGAPSDMAPSFE
VELDLDAYIPDAYISDSQQKIEMYKRFRNIDSLEEAEELKEEMIDRFGDYPEQVGYLFTV
AEMKIYARSIKLELIKQSKGEIAIYFSEEGTNEIDGRKVFQVTNRHGRIVGLGMEGSQLK
ITLQISRLSTDEWLSIVTDIIKELNTAKKEQAPV
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgcatggtttacgagatctgattttacagcaaagtgaactgcagtcagtgattgccggt
gtaaatgaaggaatccgggaacagcttgtggctggcctttcggggtccgtacgggccttg
ttcgtagctgcagcggcaaaggaaacgcgtaaatcgctgatcgttgtcacacataatttg
cttcaagcacaaaaactttatgaagaccttttacaattggtggatgaagatcaattgttt
ttataccctgcgaatgaattgattgcatccgagcttggtgtagcaagcccggagctcagg
tcacagcggattgaggcgctgaattacatggtgtccggccgccggggtatttttgtcata
ccgatggccgggcttagaaaaacattgccgccttcagacgtatggaaaaaactgcagctt
catattgaaaccggttcagagctggaccttgataagcagctgcccctgctggttcaaatg
gggtatgcccgggtggatatggtcagtgctccgggggaattcagtatccggggaggaatt
ttggatatttacccgctgactgaagctgatcccatcagaattgaactttttgatgtggaa
gtcgattccatccggacattttcaattgaagatcagcgttcaaaggaaaaactggcgcat
gtgcttattgggcctgcaacagaatcccccgttgatgcaggtggactttcccatgcagcg
gataagctcgaaaaaagccttggcagctcgttaaaaaagataaaaaaagacttaacaaaa
gagcagttgatgcaaaatatcggcgccgacatcgagcagatgcgaaacggccaaaagccc
gaacaatttttcaaatatatgaaattggcctatgatccggctgaaagtttgctagactat
gtttctcgcgactcccttttaatattggatgaattgagccggatccaggaaatgaatgaa
cgtctcgaaaaggaagaggcggagtggttcacgtctgtccttgaacatggagaggttacc
catgacctggaaattgctcactccttgaacgggctgttggcggatacttcattgccaagg
atttatttatcgttgtttttgcggcatattccaaatacaagcccccaaaacatcgcaaat
gttccatgcaagttgatgcaaaattttcatggacagatgcatttgcttgcatcagaggtg
gaacgatggagaaaaaatggcatgtcggtcatttttcttgccccggatgaagagcgcagc
caaaaaatgcagtctgttttgcgcgactatggggtggaagccgccattgcagatgacccg
gggaagtttgccggtactcaaattgtcaatggcgccttgaacacgggatttgaacttccg
tcattgaaattggcagtggtgactgaggaagaggttttcaataagaaaacaagaaaaatg
aaacgccggcaaaagctttccaatgcggagcggatcaaaagctattccgaattgaacccc
ggtgattacgtagtccatgtcaatcatggaatcggcaagtatttaggtattgaaactttg
gaaatcaagggagtccataaggattatctgcatatttcctaccaggggaacgatactttg
tacgtaccggttgaccagattgatcttgtccagaaatacgtcggttctgaaggcaaggaa
ccgaaaatgtataagctgggcggaaatgactggaagcgggttaagaaaagagtggaatcg
tcggtcaaagatattgccgacgaactgataaagctgtacgccgaacgtgaagcgacaaaa
gggtatgctttttccccggacagcgatatgcagcgggagtttgaattatctttcccttat
caggaaacagaagaccagcttaggtcgattgcggaaatcaaacgcgatatggagagggaa
cgcccgatggatcggctgctttgcggagatgtcggctacggaaaaacggaagtcgccatc
cgtgcggctttcaaagcgatcatggatggaaaacaggtggccattctggtcccgaccacc
attcttgcccagcagcattttgaaacaataaaagaaagatttaacggctatcccatcaat
atcagtctgctcagccgattcaggacaaagaaagaacagacagaaactgccaaaggtttg
aaaaatgggacagtagaccttgtgatcggtacccatcgccttttgtcaaaagatattaaa
tttgcagatctcggtctgcttatcgttgatgaagaacagcgctttggcgtctcccataag
gaaaaaatcaagcagctgaaaacgaatgtggacgtgctgactttgacggcaacccctata
ccgcggacgcttcatatgtccatgcttggagtacgggatctgtccgtcattgaaacccct
ccggaaaaccgctttcctgtccagacatatgtgatggaatataacgggacatttgtaaaa
gaagcgattgaacgagagttggcccgcgatggacaggtgtacttcctatataaccgcgta
gaagacattgaaaggaaagcggaggagatttccatgcttgtccctgatgcacgtgttgcc
tatgctcatggacaaatgggagaatcggagctcgaagccgtcattttgagctttttggat
ggtgaatttgatgtgctggtaacgacaacgatcattgaaacaggcgttgatataccaagt
gtcaacacattgatcgtttatgatgcagaccgcatggggctttcccagctgtatcagctc
aggggacgggtcggccgttccaaccgcgtggcctatgcctattttacgtaccggaaagat
aaggttttgactgaaattgcggaaaaaaggcttcaggcgatcaaagaatttaccgagctc
ggctcaggttttaaaattgcgatgcgggatttatccatccggggcgccggtaatctgctt
ggagcccagcagcacggattcattgattctgtaggatttgatttgtattctcaaatgttg
aaagaggcaatcgaagagcgcaggggaggcgctccttccgatatggctccgtcctttgag
gtggaattggatttggatgcctatataccggatgcctatatttccgacagtcagcagaaa
attgaaatgtataagcgattccgcaatatagattcattggaagaagcggaggagctcaag
gaagaaatgatcgaccgcttcggcgattacccggagcaggtgggctacttgttcacagtt
gcggaaatgaaaatatacgcccggtccatcaagctcgaattgatcaaacagtccaaagga
gaaattgccatatacttttcggaggaaggcacgaatgagattgatggaaggaaagtattc
caggtgacaaaccgccatggaaggattgtgggtcttggcatggaaggcagccaattgaaa
ataaccctgcaaatcagcaggctttcgacggatgaatggctgtccattgtaacagatatc
attaaagaattaaatacggccaagaaagagcaagcgcccgtttaa
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