Streptomyces flavofungini: QUY26_09785
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Entry
QUY26_09785 CDS
T09698
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sfp
Streptomyces flavofungini
Pathway
sfp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QUY26_09785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfp03019
]
QUY26_09785
Messenger RNA biogenesis [BR:
sfp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QUY26_09785
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
WJV45796
LinkDB
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Position
complement(2519133..2520818)
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AA seq
561 aa
AA seq
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MSHPHPELGAPPKLPKGGLRVTPLGGLGEIGRNMTVFEYDGRLLIVDCGVLFPEEEQPGI
DLILPDFTSIRDRLDDIEGIVLTHGHEDHIGGVPYLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVAEGHRERVGPFDCEFVAVNHSIPDALAVAIRTPAGMVVHTGDFKMDQLP
LDRRLTDLHAFARLSEEGIDLLLSDSTNAEVPGFVPPERDISNVLRQVFAGARKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLKVPPGLVVDVKTLDDLPD
HEVVLVCTGSQGEPMAALSRMANRDHQIRIVSGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICKPKNLMPVHGEWRHLRANAELGALTGVPHD
RIVIAEDGVVVDLVAGKAKIVGKVQAGYVYVDGLSVGDVGEPALKDRKILGDEGIISVFV
VVDSSTGKITGGPHVQARGSGIEDSAFNAVIPKVQEVLEKSAQDGVVEPHQLQQLIRRTL
GKWVSDNYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcctgaactgggcgccccgccgaagctcccgaagggcggcctgcgg
gtcaccccgctgggcggcctcggtgagatcggccgcaacatgaccgtcttcgagtacgac
gggcggctcctgatcgtcgactgcggagtgctcttccccgaggaggagcagcccggaatc
gacctgatcctgccggacttcacgtccatccgggaccgcctcgacgacatcgagggcatc
gtcctcacgcacggccacgaggaccacatcggcggtgtcccctatctcctgcgcgagaag
ccggacatccccctgatcggctccaagctgaccctcgccctgatcgaggccaagctccag
gagcaccgcatccggccctacacgctcgaggtcgccgaggggcaccgcgagcgcgtcggc
cccttcgactgcgagttcgtcgcggtcaaccactccatcccggacgccctcgccgtggcc
atccgcacccccgcgggcatggtcgtgcacaccggcgacttcaagatggaccagcttccg
ctggaccgtcgcctcacggacctgcacgccttcgcgcgtctgagcgaggagggcatcgac
cttcttctctccgactccacgaacgccgaggtcccgggcttcgtcccgccggagcgcgac
atctcgaacgtgctccgccaggtcttcgcgggtgcccggaagcggatcatcgtggccagc
ttcgccagccatgtgcaccgcatccagcagatcctcgacgcggcccacgagtacggccgc
agggtcgccttcgtcggccgctccatggtccgcaacatgggcatcgcacgtgacctcggc
tacctgaaggtcccgccgggcctggtcgtcgacgtcaagaccctcgacgacctgccggac
cacgaggtcgtcctggtctgcacgggttcccagggcgagccgatggcggcgctctcccgc
atggccaacagggaccaccagatccgcatcgtctcgggcgacacggtgatcctggcgtcg
tcgctcatcccgggcaacgagaacgcggtctaccgcgtcatcaacggcctgacccgctgg
ggcgccaacgtcgtccacaagggcaacgccaaggtgcacgtctcgggccacgcctcggcc
ggcgagctgctgtacttctacaacatctgcaagccgaagaacctgatgccggtccacggc
gaatggcgccacctgcgcgccaacgccgagctcggcgccctcaccggcgtaccgcacgac
cgcatcgtcatcgccgaggacggcgtcgtggtcgacctcgtcgcgggcaaggccaagatc
gtcggcaaggtgcaggcggggtatgtgtacgtcgacgggctctccgtcggcgacgtgggc
gagcccgccctcaaggaccgcaagatcctcggggacgagggcatcatctcggtcttcgtg
gtggtggactcctccaccggaaagatcaccggcggcccgcacgtccaggcccggggctcc
ggcatcgaggactcggcgttcaacgccgtcatcccgaaggtccaggaagtcctggagaag
tcggcccaggacggcgtcgtcgaaccccaccagctgcagcagctcatccgccgcacgctg
ggcaagtgggtgtcggacaactaccgccgccgcccgatgatcctgccggtcgtcgtcgag
gtctga
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