Streptomyces flavofungini: QUY26_11955
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Entry
QUY26_11955 CDS
T09698
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sfp
Streptomyces flavofungini
Pathway
sfp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QUY26_11955 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfp03021
]
QUY26_11955 (rho)
03019 Messenger RNA biogenesis [BR:
sfp03019
]
QUY26_11955 (rho)
Transcription machinery [BR:
sfp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
QUY26_11955 (rho)
Messenger RNA biogenesis [BR:
sfp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
QUY26_11955 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA
ResIII
AAA_22
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
WJV46188
LinkDB
All DBs
Position
complement(3033239..3035272)
Genome browser
AA seq
677 aa
AA seq
DB search
MSDTTDLMGVTADTPATDASAAPATGASAGSRRRRGTGLEGMVLAELQQVASGLGIKGTA
RMRKSQLIDVIKEAQAAGGAPAKSAPATASAGDTETKPKRRATSRARTGEAAEKAAATKA
AKSDEAAAAPAEQPKAAQQQIDIPGQPASEDKSTGGRGRRRVTAEAGSPETVTAEAKAQG
EPKAEAGAVKTETEKADRGDRGDSGEGEGRQGRRDRQGRGRDRDRRGNKGDDQQGGGNRK
EQGGRQDRQDRQQRDNGPQDDFDDEGGGRRGRRGRYRDRRGRRGREDFAGEPQVSEDDVL
IPVAGILDILDNYAFIRTSGYLPGPNDVYVSLAQVRKNGLRKGDHVTGAVRQPKDGERRE
KFNALVRLDSVNGMAPESGRGRPEFNKLTPLYPQDRLRLETDPGVLTTRIIDLVSPVGKG
QRGLIVAPPKTGKTMIMQAIANAITHNNPECHLMVVLVDERPEEVTDMQRSVKGEVISST
FDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRILSGGVDS
TALYPPKRFFGAARNIEDGGSLTILATALVDTGSRMDEVIFEEFKGTGNMELKLDRKLSD
KRIFPAVDVDASSTRKEEILLGSDELAIVWKLRRVLHALDQQQAIELLLDKMKQTKSNAE
FLLQIQKTTPAPGNGND
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccaccgatctgatgggcgtgactgccgacacgcccgccacggacgcctcc
gcggcgcctgccaccggtgcttcggccgggtcccggcggcgccgcggcaccggcctcgag
ggcatggtgctggccgaactgcagcaggtcgcatcgggcctgggcatcaagggcaccgcc
cggatgcgcaagagccagctgatcgacgtcatcaaggaagcgcaggccgcgggcggagct
ccggcgaagagcgcccccgccacggcgtccgccggcgacaccgagaccaagccgaagcgc
cgcgccacctcgcgggcgcgcaccggcgaggccgccgagaaggccgccgcgaccaaggcc
gccaagtccgatgaggccgccgcggccccggccgagcagccgaaggccgcccagcagcag
atcgacatccccggccagccggcgagcgaggacaagtcgacgggcgggcgcggccgtcgt
cgcgtcaccgccgaggccggcagccccgagaccgtgaccgccgaggccaaggcccagggc
gagccgaaggccgaggccggcgccgtcaagacggagaccgagaaggccgaccggggcgac
cggggcgactccggcgagggcgagggccgtcagggccgccgcgaccgccagggccgcggc
cgggaccgcgaccgtcgcggcaacaagggcgacgaccagcagggcggcggcaaccgcaag
gagcagggcggccgccaggaccggcaggaccgccagcagcgcgacaacggcccgcaggac
gacttcgacgacgagggcggcggccgccgcggccgccgtggccgctaccgcgaccgccgt
ggccgtcgcggccgcgaggacttcgcgggcgagccgcaggtgtccgaggacgacgtcctg
atcccggtcgcgggcatcctggacatcctcgacaactacgccttcatccggacgtcgggc
tacctccccggcccgaacgacgtctacgtctcgctggcccaggtccgcaagaacggcctg
cgcaagggcgaccacgtcaccggtgcggtgcgccagcccaaggacggcgagcgccgcgag
aagttcaacgcgctcgtgcgtctggactccgtgaacggcatggcgcccgaatccgggcgc
gggcggccggagttcaacaagctgacgcccctttacccgcaggaccggctccgtctggag
accgacccgggcgtcctgacgacccgcatcatcgacctcgtctcgcccgtcggcaagggc
cagcgcggtctgatcgtggccccgccgaagaccggcaagaccatgatcatgcaggccatc
gccaacgcgatcacgcacaacaaccccgagtgccacctgatggtcgtcctcgtcgacgag
cgtccggaagaggtcacggacatgcagcggtcggtgaagggcgaggtcatctcctcgacc
ttcgaccgcccggccgaggaccacaccacggtcgccgagctggccatcgagcgcgccaag
cgcctggtggagctgggccacgacgtggtcgtactgctcgactcgatcacgcgtctcggc
cgtgcgtacaacctcgccgccccggcctccggccgcatcctgtccggtggtgtcgactcc
accgcgctgtacccgcccaagcggttcttcggcgccgcgcgcaacatcgaggacggcggc
tcgctgaccatcctcgcgaccgcgctcgtggacaccggctcccgcatggacgaggtgatc
ttcgaggagttcaagggcaccggcaacatggagctcaagctcgaccggaagctctcggac
aagcgcatcttcccggcggtggacgtggacgcgtccagcacccgcaaggaagagatcctg
ctcggcagcgacgagctcgccatcgtctggaagctgcgccgggtgctgcacgcgctcgac
cagcagcaggccatcgagctcctcctggacaagatgaagcagacgaagtcgaacgccgag
ttcctgctccagatccagaagacgacgccggcgccgggcaacggcaacgactga
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