Streptomyces flavofungini: QUY26_20775
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Entry
QUY26_20775 CDS
T09698
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sfp
Streptomyces flavofungini
Brite
KEGG Orthology (KO) [BR:
sfp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfp03019
]
QUY26_20775 (hrpA)
Enzymes [BR:
sfp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QUY26_20775 (hrpA)
Messenger RNA biogenesis [BR:
sfp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
QUY26_20775 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
AAA_22
nSTAND3
nSTAND_NTPase5
T2SSE
NACHT
AAA_25
PhoH
ResIII
NTPase_1
TsaE
SLFN-g3_helicase
DUF6139
Zeta_toxin
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WJV47739
LinkDB
All DBs
Position
complement(4932776..4936735)
Genome browser
AA seq
1319 aa
AA seq
DB search
MSTQPALTLDALAPRLTELSLRDEHRIGRRLEGARRIRKPEARAAVLAEIAADVEKAAAH
MAGRAAGVPAITYPEQLPVSQKKDEIAEAIRDHQVVIVAGETGSGKTTQIPKICLELGRG
VRGLIGHTQPRRLAARTVAERVADELNTPLGEAVGWKVRFTDQVSDGTYVKLMTDGILLA
EIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPERFARH
FGDAPIVEVSGRTYPVEVRYRPLLEEDNDDPDRDQITAITDAVEELQAEGKGDILVFLSG
EREIRDTADALNKKNYRFTEVLPLYARLSHAEQHRVFQRPGAGTARRIVLATNVAETSLT
VPGIKYVIDPGTARISRYSHRTKVQRLPIEAISQASANQRKGRCGRTSDGICIRLYSEED
FLARPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQELGALD
PTQKDPKKRLTQQGRKLAQLPVDPRLARMVLEADKNGCVREVMVIAAALSIQDPRERPAD
KQTQADQQHARFKDETSDFLAYLNLWRYVREQQKELGSSAFRRLCKREYLNFLRIREWQD
IYTQLRTVAKQLGVRLNDDDAGDKQVHLSLLAGLLSHIGMKDVKEGAKNEYLGARSAKFA
VFPGSALFKKPPRFIMSAELVETSRLWARVNARIEPEWIEPLAQHLLKRTYSEPHWEKDQ
AAVMAYEKVTLYGVPIVTDRKVNYGRIDPEVSRELFIRNALVEGDWRTHHKFFADNRRLL
TEVEELEHRARRRDILVDDETLFDFYDQRVPEHVVSGAHFDSWWKKKLQEGGAASELLDF
ERSMLINERAGDVSKNDYPDSWRQGPLKFRVTYQFEPGADADGVTVHIPLQVLNQVSPDG
FDWQIPGLREEVVTELIRSLPKPIRRHYVPAPNYAKEFLQRATPLQEPLHVTLGRELQKM
VGVPVHGDDFDLSRVPDHLKITFRITDERRRKLAEDKDLEALKLRLKPKARKALSQAAAA
TAERSGGESVERTGLTDWTIGTLSRVFETRRAGQPVKAFPALVDDGDTVSVRLFDTEAEQ
TGAMWRGTRRLILRNIPVNPAKFAQDKLTNAQKLALSANPHGSMQALFDDCARAAADKLI
ADFGGPAWDEESYRKLYEKVRAEIVDTTVHAVAQVQQVLAAWQACERRLKSTRSPALLAN
LADVREQLDALIKPGFVTETGLRRLPDLMRYLVAADRRLQQMPTSVQRDTTRMEKVREMR
DEYAWLLEQLPQGRPVPREVLDIRWMIEELRVSYFAHALGTAYPVSDKRIVKAIDAAAP
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgcagcccgccctcaccctcgacgccctcgccccccgcctgacggagctctcg
ctgcgcgatgagcaccggatcggcaggcggctcgaaggtgcgcgccggatccgcaagccc
gaggcccgcgccgccgttctcgcggagatcgcggcggacgtcgagaaggccgcggcccac
atggcgggccgcgccgccggcgtgcccgcgatcacgtatccggagcaactgccggtcagc
cagaagaaggacgagatcgccgaggcgatccgcgaccaccaggtcgtgatcgtcgcgggt
gagacgggctcgggcaagacgacccagatcccgaagatctgtctggagctcggccggggc
gtgcgcggcctgatcgggcacacgcagccgcgccgcctcgcggcccgcacggtcgcggag
cgggtggccgacgagctgaacacgccgctcggcgaggcggtcggctggaaggtccgcttc
acggaccaggtgagcgacggcacgtacgtgaagctgatgacggacggcatcctgctcgcc
gagatccagacggaccgcgagctgcgcgcgtacgacacgatcatcatcgacgaggcccac
gagcggtccctgaacatcgacttcctgctcggctatctcgcgcagctgctgccgaagcgc
ccggacctgaaggtggtcatcacctccgcgaccatcgacccggagcgcttcgcgcgccac
ttcggggacgcaccgatcgtcgaggtcagcggccggacgtatccggtggaggtgcggtac
cgcccgctcctggaagaggacaacgacgaccccgaccgcgaccagatcaccgcgatcacg
gacgccgtcgaggagctccaggccgagggcaagggcgacatcctggtcttcctgtccggc
gagcgcgagatccgggacacggcggacgcgctgaacaagaagaactacaggttcaccgag
gtcctccccctctacgcccggctgtcgcacgccgagcagcaccgcgtgttccagcggccc
ggtgcaggaacagcgcgaagaatcgtcctggcgaccaacgtcgccgagacgtccctgacg
gtcccgggcatcaagtacgtcatcgacccgggcaccgcccgcatctcccgctacagccac
cgcacgaaggtgcagcgcctgcccatcgaggcgatcagccaggccagcgccaaccagcgc
aagggccgctgcggccgtacgtcggacggcatctgcatccggctgtacagcgaggaggac
ttcctcgcccgccccgagttcacggacgcggagatcctgcgcacgaacctcgcctccgtc
atcctgcagatgaccgcggccgggctcggcgacatcgagaagttccccttcatcgacccg
ccggaccaccgcaacatccgcgacggcgtgcagctcctccaggagctcggcgccctcgac
cccacccagaaggacccgaagaagcggctcacgcagcagggccgcaagctggcccagctg
cccgtggacccgcggctcgcccggatggtcctggaggccgacaagaacggctgtgtgcgc
gaggtcatggtgatcgcggccgcgctgtccatccaggacccgcgcgagcgccccgccgac
aagcagacgcaggccgaccagcagcacgcccgcttcaaggacgagacgtccgacttcctc
gcgtatctgaacctgtggcggtacgtccgcgagcagcagaaggagctcggctcctccgcg
ttccgccgcttgtgcaaacgcgagtatctgaacttcctgcggatccgtgagtggcaggac
atctacacccagctgcgcacggtggccaagcagctcggcgtccgtctgaacgacgacgac
gcgggcgacaagcaggtccatctctcgctgctcgccgggctgctgtcccacatcggcatg
aaggacgtcaaagaaggcgcgaagaacgagtacctgggcgcgcggagcgccaagttcgcg
gtcttccccggctcggccctcttcaagaagcccccgcgcttcatcatgtcggccgagctg
gtcgagacgtcccggctgtgggcccgcgtcaacgcgaggatcgagcccgagtggatcgag
ccgctggcccagcacctgctcaagcgcacatacagcgagccgcactgggagaaggaccag
gcggccgtcatggcgtacgagaaggtgacgctgtacggcgtcccgatcgtcaccgaccgc
aaggtgaattacggccggatcgaccccgaggtctcccgggaacttttcattcgcaatgcc
ttggtcgagggtgactggcgcacgcaccacaagttcttcgccgacaaccgccggctgctc
accgaggtcgaggagctggagcaccgggcccggcgccgcgacatcctcgtcgacgacgag
accctgttcgacttctacgaccagcgggtgcccgagcacgtggtgtcgggggcgcacttc
gactcctggtggaagaagaagctccaagaaggaggcgcagcctccgagctgctcgacttc
gagcggtcgatgctcatcaacgagcgcgcgggcgacgtgtcgaagaacgactatccggac
agctggcgccaggggccgctgaagttcagggtgacgtaccagttcgagccgggcgcggac
gcggacggcgtgaccgtccacatcccgctccaggtgctcaaccaggtctcgcccgacggc
ttcgactggcagatccccggcctgcgcgaggaggtcgtcaccgagctgatccgctccctg
ccgaagccgatccgccgccactacgtccccgcgcccaactacgccaaggagttcctgcag
cgggccacccccctccaggagccgctgcacgtcacgctcgggcgcgagctgcagaagatg
gtcggcgtgcccgtgcacggcgacgacttcgacctgagccgcgtaccggaccacttgaag
atcacgttccggatcaccgacgagcggcgccgcaagctcgccgaggacaaggacctcgag
gccctgaagctccggctcaagccgaaggcccgcaaggccctgtcacaggcggccgccgcg
acggccgagcgctcgggcggggagtccgtggagcgcaccggcctcacggactggaccatc
ggcacgctctcccgcgtcttcgagacccggcgggcgggccagcccgtgaaggccttcccg
gccctggtcgacgacggcgacaccgtctccgtacgcctcttcgacaccgaggcggagcag
acgggcgcgatgtggcggggcacccgccgcctcatcctgcgcaacatcccggtcaatccg
gccaagttcgcccaggacaagctcaccaacgcccagaagctcgccctgtcggcgaatccg
cacggctccatgcaggccctcttcgacgactgcgcgcgggccgcagcggacaagctcatc
gcggacttcggcgggcccgcgtgggacgaggagtcgtaccgcaagctgtacgagaaggtg
cgcgccgagatcgtcgacacgaccgtgcacgccgtcgcgcaggtccagcaggtcctcgcc
gcctggcaggcctgcgagcggcgcctgaagtccaccaggagcccggcgctgctcgcgaac
ctcgcggacgtgcgggagcagctcgacgccctcatcaagcccggcttcgtcacggagacg
gggctgcgcaggctgcccgacctgatgcgctacctggtcgccgcggaccgcaggctccag
cagatgccgacgagcgtccagcgggacaccacgcgcatggagaaggtccgcgagatgcgc
gacgagtacgcctggctcctggagcagctgccgcaggggcggcccgtgccgcgcgaggtc
ctggacatccgctggatgatcgaggagctgcgcgtcagctacttcgcgcacgccctcggc
acggcgtaccccgtctcggacaaacgcatcgtgaaggccatcgacgccgccgctccctga
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