Streptomyces flavofungini: QUY26_26385
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Entry
QUY26_26385 CDS
T09698
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sfp
Streptomyces flavofungini
Pathway
sfp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QUY26_26385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfp03019
]
QUY26_26385
03009 Ribosome biogenesis [BR:
sfp03009
]
QUY26_26385
Enzymes [BR:
sfp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
QUY26_26385
Messenger RNA biogenesis [BR:
sfp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QUY26_26385
Ribosome biogenesis [BR:
sfp03009
]
Prokaryotic type
rRNA processing factors
QUY26_26385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
WJV48728
LinkDB
All DBs
Position
6214459..6218910
Genome browser
AA seq
1483 aa
AA seq
DB search
MLEPNDPTEGSNNNSTPSDTLPPRRRRRAASRPAGPPAGTTTDAGPAIPATPATAVDTAP
AAATDVDEEAEALETDEQAQPAESAENTEAAAPAAEATAPAAAEESAVAEAAPARTRRRA
TRRASAPAGAPQSAASADATTEAAAPAAEATAPAAAEESAVAEAAPARTRRRATRRASAP
AGAPQTAEAEQPSAVTESPAAPAAESSEAAAPEADAAPRRTRRRATRSVSAPTADAQAAP
AAESAPATESATTTEAVASTETAESSEAAAPEADAAPRRTRRRATRSVSAPTADAQAAPA
AESATTTEAVASTETAEAAAPKAAEVAETPAAEDAAPRRGRRRATRAAASAAEAQPAEAP
AEAPEQADAPRGRAAREAEAAEQAEADAPRGRTRRRATRKAAAGFTSPAAASARSDDDSE
RRPARPAVAVFQAPVFAEPMFQTPERAAAAAAAEAAEQTAEPEPEPAPVAEEETGPRRRR
RRRAADEQPAAAPVAAEPEQTVEAEPAEAETDVDTEGADEAADGEDAGERHGRRRRRGGR
RRRRGESADADGAEQSDDAAERSDEAAADSSDADEAAADGADEDTDDAEAAGGSGSSSSR
RRRRRRRRAGDSAETEPGDGDPERTVVKVREPRKKGDDSPSDEVQSIKGSTRLEAKKQRR
REGREQGRRRVPIITEAEFLARREAVNREMIVRQNGDRTQIGVLEDNILVEHYVNKEQST
SYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALGMANGPRRIESALKSGQ
SVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTILKKIV
PEDAGVIVRTAAEGASEDELRRDVERLQAQWEDILKKSKMTTTSSPSLLYGEPDMTVRVV
RDIFNEDFSKVIISGDEAWETIHGYVSHVAPDLADRLQRWTSEVDVFATYRIDEQLAKAL
DRKVWLPSGGSLVIDKTEAMVVIDVNTGKFTGQGGNLEETVTRNNIEAAEEIVRQLRLRD
LGGIVVIDFIDMVLESNRDLVLRRMLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLE
SFSETCVHCNGRGLIVHMDQATTAGGGGKRKKRGRGGAEQGAGHDHTHEAAESGAEAVET
AAEVAAEIAEPLALPEPAFVPDEELYSSPAEAEAAASRGRSRRRATRRASAPAGAPKAET
AEAEAPESVERAEQPEPVEKAEKPEKAEKPERAEKSGRAAKAARAEKKAKSRAGKAKAEP
VEEAAEVPAVEVPVEEAPAAAPVAEPVEAPAVEVPVEDDAAPKGRTRRRATRKATAPAGS
PKAAADGAEVIIAEAAKPEPVAEAPATEPVAAAEPVAGAAPEPPARPRRRAVRKATAPTA
SEEAAVLVVPAADKPAEAAADQAPEAPAADAEEAAPAAKKAARKTAKKATAKKAATKKTA
AKKTTAKKTAAKKTTAKKAAKTTKKAAAAEQSGTAVAAPADAG
NT seq
4452 nt
NT seq
+upstream
nt +downstream
nt
atgcttgagccgaacgaccccactgagggttcgaacaacaacagcacacccagcgacacc
ctgcccccgcgccgccggcgccgggccgcgtcgcgtcccgcgggaccgcccgcgggcacc
accacggacgccgggccggccataccggccacccccgccaccgccgtggacaccgctccg
gccgccgcgaccgacgtcgacgaagaggccgaggccctggagacggacgagcaggcccag
cccgcggagagcgcggagaacaccgaggccgccgcgcccgccgccgaggccaccgcgcct
gccgccgccgaggagtcggctgtggcagaggccgcgcccgctcgcacgcggcgtcgcgcc
acccgccgcgcctccgcgcccgccggtgccccgcagtccgccgcgtcggccgacgccacg
accgaggccgccgcgcccgccgccgaggccaccgcgcctgccgccgccgaggagtcggcc
gtggcagaggccgcgcccgctcgcacgcggcgccgtgccacccgccgcgcctccgcgccc
gccggtgccccgcagacggccgaggcggagcagccgtcagccgtcaccgagagcccggcc
gcgcccgccgccgagtcctccgaggccgccgcgcccgaggccgacgccgcgccgcgccgc
acccgtcgccgggccacccgcagcgtgtccgcgcccaccgccgacgcgcaggccgccccg
gccgcagagtccgccccggccacagagtccgccaccaccacggaggccgtcgcgtccacc
gagaccgccgagtcctccgaggccgccgcgcccgaggccgacgccgcgccgcgccgcacc
cgtcgccgggccacccgcagcgtgtccgcgcccaccgccgacgcgcaggccgccccggcc
gcagagtccgccaccaccacggaggccgtcgcgtccaccgagaccgccgaagccgcagcg
ccgaaggccgccgaggtcgccgagactccggccgccgaggacgccgcgccgcgccgtggc
cgccgccgtgccacccgcgccgccgcgtccgccgctgaggcgcagcccgccgaggccccg
gccgaggcgccggagcaggccgacgccccgcgcggccgtgccgcccgcgaggccgaggcc
gccgagcaggccgaagcggacgccccgcgcggtcgtacccgccgccgtgccacccgcaag
gccgccgccggattcacctcgccggccgccgcgagcgcgcgttccgacgacgacagcgag
cgccgcccggcgcggcccgccgtggccgtgttccaggcgcccgtgttcgccgagccgatg
ttccagaccccggagcgcgccgccgccgctgccgccgccgaggcggccgagcagaccgcc
gagcccgagcccgagcccgcgcccgtcgccgaggaggagacgggcccgcgccgccgtcgc
cgccgccgcgccgcggacgagcagcccgccgccgcgccggtcgccgcggagcccgagcag
accgtcgaggccgagcccgccgaggcggagaccgacgtcgacaccgaaggcgccgacgag
gccgccgacggcgaggacgccggtgagcgccacggccggcgccgccgccgcggtggccgt
cgccgccgtcgtggcgagtccgccgacgccgacggcgccgagcagtcggacgacgccgcc
gagcggtccgacgaggccgccgccgactcgtccgacgccgacgaggccgcggccgacggc
gccgacgaggacaccgacgacgccgaggccgccggtggctccggctccagcagcagccgt
cgccgccgtcgccggcgccgccgcgccggtgactccgccgagaccgagccgggcgacggc
gacccggagcgcacggtcgtcaaggtccgcgagccccgcaagaagggcgacgactcgccc
tcggatgaggtgcagtccatcaagggctcgacccgtctcgaggccaagaagcagcgccgc
cgcgagggccgcgagcagggccgccgccgggtgccgatcatcaccgaggccgagttcctg
gcccgccgtgaggcggtcaaccgggagatgatcgtccgtcagaacggtgaccgcacccag
atcggcgtcctcgaggacaacatcctcgtcgagcactacgtcaacaaggagcagtcgacc
tcgtacgtcggcaacgtctacctgggcaaggtccagaacgtgctcccctcgatggaggcc
gccttcatcgacatcggcaagggccgcaacgccgtcctgtacgccggtgaggtcaacttc
gaggcgctcggcatggccaacgggccgcgccgcatcgagtccgccctgaagtcgggccag
tccgtgctcgtgcaggtcaccaaggacccgatcggccacaagggcgcccgcctgaccagc
caggtctcgctgcccggccgctacctggtctacgtgcccgaaggctccatgacgggcatc
agccgcaagctgcccgacaccgagcgcgcgcgtctgaagaccatcctcaagaagatcgtc
cccgaggacgcgggcgtcatcgtgcgcaccgccgccgagggcgcgagcgaggacgagctg
cgccgtgacgtggagcggctgcaggcgcagtgggaggacatcctcaagaagtcgaagatg
accaccaccagctcgccgagcctgctctacggcgagccggacatgaccgtccgcgtggtc
cgcgacatcttcaacgaggacttctcgaaggtcatcatcagcggcgacgaggcctgggag
accatccacggctacgtctcgcacgtcgcgcccgacctggcggaccgcctccagcggtgg
acgtcggaggtcgacgtcttcgcgacgtaccggatcgacgagcagctcgccaaggcgctc
gaccgcaaggtgtggctgccctcgggcggctccctcgtgatcgacaagaccgaggccatg
gtcgtgatcgacgtcaacaccggcaagttcaccggtcagggcggcaacctcgaagagacc
gtgacgaggaacaacatcgaggcggccgaggagatcgtgcgccagctgcggctgcgcgac
ctcggcggcatcgtcgtcatcgacttcatcgacatggtcctggagtccaaccgggacctg
gtcctgcgccggatgctggagtgcctgggccgggaccggaccaagcaccaggtcgccgag
gtcacctcgctgggtctcgtgcagatgacccgcaagcgcgtcggtcaggggctcctggag
tccttctccgagacctgtgtgcactgcaacggccgcggcctcatcgtgcacatggaccag
gcgacgaccgccggtggcggcggcaagcgcaagaagcgcggccgtggcggcgccgagcag
ggcgcgggccacgaccacacgcacgaggccgcggagtcgggtgccgaggccgtcgagacg
gcggccgaggtcgccgccgagatcgccgagcccctggcgctgcccgagcccgcgttcgtg
cccgacgaggagctgtacagcagcccggccgaggccgaggccgccgcttcccgtggccgt
tcgcggcgtcgggccacgcggcgggcgtcggctccggcgggcgcgccgaaggcggagacg
gccgaggccgaggcgccggagagcgtggagcgggccgagcagcccgagcccgtcgagaag
gccgagaagccggagaaggccgagaagccggagagggccgagaagagcgggcgtgcggcc
aaggccgcgcgtgccgagaagaaggccaagtcgcgggcgggcaaggccaaggcggagccg
gtcgaggaggccgccgaggtgcccgcggtggaggtcccggtcgaggaggccccggcggcc
gctccggtcgccgagcccgtcgaggcccccgcggtggaggtcccggtcgaggacgacgcg
gctcccaaggggcgtacgcggcgtcgggcgacccgcaaggcgacggctccggccggttcg
ccgaaggcggccgccgacggcgctgaggtgatcatcgcggaggccgccaagcccgagccg
gtcgccgaggccccggccaccgagccggtcgccgcggccgagccggtcgcgggggcggcc
ccggagcccccggcgcgcccgcgtcgccgtgccgtgcgcaaggccaccgcgccgaccgcg
tccgaggaggcggccgtcctggtcgtccccgcggcggacaagccggccgaggcggccgcg
gaccaggcgcccgaggcgcccgccgccgacgccgaggaagccgctccggccgccaagaag
gcggcgcgcaagacggccaagaaggccaccgccaagaaggccgcgacgaagaagaccgcg
gccaagaagacgacggcgaagaagacggccgccaagaagacgacggccaagaaggcggcg
aagaccaccaagaaggccgcggccgccgagcagtcgggcaccgcggtcgccgccccggcc
gacgcgggctga
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