Shewanella frigidimarina: Sfri_0142
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Entry
Sfri_0142 CDS
T00395
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sfr
Shewanella frigidimarina
Pathway
sfr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Sfri_0142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfr03021
]
Sfri_0142
03400 DNA repair and recombination proteins [BR:
sfr03400
]
Sfri_0142
Enzymes [BR:
sfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Sfri_0142
Transcription machinery [BR:
sfr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Sfri_0142
DNA repair and recombination proteins [BR:
sfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Sfri_0142
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ABI70005
UniProt:
Q089R0
LinkDB
All DBs
Position
161443..165669
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTTLERGQMLTEETYLDALEEYGDEFEAKM
GAEAVLELLRAINLAEQIEQMREELPSINSETRRKKVTKRLKLMEAFFTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEARGLATTIKAAKKMVEREQAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRECINGRGEGMAFADVSEVEKAYATG
VAELHARVKVRITETNIADDGERTKSTRIIDTTVGRALLSLILPEGLSYDLVNQNMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYTGFRFATISGASVGIDDMVIPDEKYTLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRDGVPEQQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGVEHGLTMKPLIEGGDVVEPLRERVL
GRVVALDVMKPGTNEVLAPRNTLLDEAWCNTLEEHSIDEVIVRSVITCDTDFGVCAACYG
RDLARGHIINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNAGSLKL
HNAKHVSNIDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLEKLEDSEVAAGEIIANW
DPHTHPIISEVAGSVKFVDMIDGVTMTRQTDELTGLSSVVVLDVGARTSAGKELRPAIRL
VDADGNDLMIPGTEVPAQYFLPGNAIVSKDDNAKINVGDPLARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGSEHYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCLITSTGDTEFLEGEQAEVSRVKIANRELIAQGKTPATFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDPLRGLKENVIVGRLIPAGTGYAYHKTRNEERAKILSSR
GKVETTTVTASEAEKNLADLLNLAGSQD
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttcttaaacagcaaagtaagactgaagaatttaacggtata
aaaattggtttggcctcgccagatctaatccgttcttggtcttttggtgaagtaaagaag
ccagaaaccattaactaccgtacattcaagcctgaacgtgaaggtttgttctgtgcgcgt
atctttggtccagttaaagattacgaatgtttgtgtggtaaatacaagcgtttgaagcat
cgtggtgttatttgtgaaaagtgtggcgtagaagttacccagactaaagtgcgtcgtgaa
cgcatgggtcacattgatctggctagcccagttgcccacatttggttcttaaaatcactt
ccgtcacgtattggcttaatgctagatatgacgttgcgtgatattgaacgcgtactgtat
ttcgaatcatttgttgtgatcgagcctggcatgaccacgcttgagcgcggccaaatgcta
accgaagaaacgtatcttgatgcgttagaagaatacggtgacgagtttgaagctaaaatg
ggtgctgaagcagttcttgaattgctacgagctatcaacttagctgaacagatcgagcaa
atgcgcgaagagttgccttcaattaactctgaaacccgtcgcaagaaggtcactaagcgc
cttaagctgatggaagcattcttcacatctggcaacaagccagagtggatgatcttaaaa
gtattaccggttcttccacctgatctacgtccattagtgccgttagatggtggtcgtttc
gcgacatctgatcttaatgatctataccgtcgtgtgattaaccgtaacaaccgcttaaag
cgtctgttagatttagctgcgcctgacattatcgtacgtaacgaaaaacgtatgttacaa
gagtcagttgatgcgctattagataacggtcgtcgcggtcgtgctattacgggttctaac
aagcgtccgcttaaatctcttgctgatatgatcaagggtaagcaaggtcgtttccgtcag
aacttacttggtaagcgtgttgactattcaggtcgttcggtaattaccgtaggtcctact
ttacgtctgcatcagtgtggtcttcctaagaagatggcacttgagctattcaagccattt
atttacggcaagctagaagcccgtggtttagcgactacgattaaagctgctaagaaaatg
gttgaacgcgaacaggctgaagtatgggatgtgttagacgaagtaattcgtgaacatcca
gtaatgcttaaccgtgcaccaacacttcacagactaggtattcaagcatttgaacctgtt
ctgattgaaggtaaagcaattcaattgcatccgttagtttgtgcggcatacaacgccgac
ttcgacggtgaccaaatggcggttcacgttccattaacgcttgaagctcagttagaagct
cgtgcgctaatgatgtcaaccaacaacattttgtcacctgctaacggtgagcctgtaatt
actccgtctcaggacgttgtattaggtttgtactacaccagccgtgaatgtattaacggt
cgcggtgaaggtatggcgttcgctgatgtgtcagaagtagaaaaagcttacgctactggt
gttgctgaactacatgctcgcgttaaagtacggattaccgaaacgaacatcgcagatgat
ggcgaaagaactaaatcaactcgtatcattgataccacagttggtcgtgctcttttatca
ttaattttgcctgaaggcttatcgtatgatttggttaaccaaaacatgggtaagaaacag
atttctaaactgttgaacacttgttatcgtcaactaggtcttaaagatacagttatcttt
gctgaccaattgatgtataccggtttccgttttgcaaccatttctggtgcctctgttggt
atcgatgacatggttattccagacgagaaatacaccttagtagctgacgctgaagctgaa
gtgcttgaaattcaagagcagttccaatcaggtcttgttactgccggtgagcgttacaac
aaagtcatcgatatctgggcaagtgcgaacgaaaaagtttcaaaagcgatgatggaaaac
ctgtcaactgagacagtgattaaccgtgatggcgtacctgagcaacaagcttcgtttaac
agcatctatatgatggctgactcgggcgctcgtggtagtgctgcacagatccgtcagtta
gcgggtatgcgtggtttgatggctaagccagatggctcaatcatcgaaaccccaattacg
gctaacttccgtgaaggtctaaacgtacttcagtactttatttctactcacggtgcgcgt
aaaggtcttgccgatacagcattgaagacagctaactcgggttacttgactcgtcgttta
gtagacgttgcacaagacttagtcgttatcgaagatgactgtggtgttgagcatggtctt
acaatgaaaccgcttattgaaggtggtgatgttgttgagccattgcgtgaacgtgttcta
ggtcgtgtagttgctcttgacgtaatgaagccaggtactaatgaagtgcttgctccacgc
aacacacttcttgatgaagcatggtgtaatacgttagaagaacacagcattgatgaagtg
attgtacgttctgtaattacctgtgacacagacttcggtgtgtgtgcagcgtgttatggt
cgtgacttggctcgtggtcatattattaaccacggtgaagctattggtgttgttgcagct
cagtcaattggtgaacctggtacacagttaaccatgcgtaccttccacattggtggtgcg
gcatctcgagcttctgcagaaaacaacgttcaagttaagaatgcgggttctctgaagtta
cacaatgctaagcatgtttctaacatcgacggtaagctcgttatcgtatctcgttcttct
gagttagctatcatcgatgagctaggtcgtgagaaagagcgttataaagtgccttacggt
acagtattagagaaattggaagacagtgaagttgcagctggcgaaatcatcgctaactgg
gatccacatactcacccaattatttctgaagttgctggtagcgtgaagttcgttgacatg
attgatggtgtcactatgacacgtcaaacagatgagttaacgggcctatcttctgtcgtt
gtgctcgatgttggtgcgcgtacttcagccggtaaagaattgcgtccagcaattcgctta
gttgatgctgatggtaatgacttaatgatccctggtactgaagtaccagctcaatacttc
ttaccgggtaacgcgattgtatcgaaagatgataacgcgaaaatcaacgttggtgatcca
ttagcacgtattccacaagaatcgtctaaaactcgcgacatcaccggtggtcttccacgt
gttgctgacttattcgaagcgcgtaaaccaaaagagcctgcaattcttgcagaaatctct
ggtacgatctcgttcggtaaggaaacgaagggtaaacgtcgtctagtgatcactccagct
gatggcagtgaacattatgaagaaatgatccctaagtggcgtaacttgaacgtgttcgaa
ggtgaaaaagtcgaacgtggtgaagttattgcagacggtccagaagcggctcatgacatc
ttgcgtcttcgtggtatccacaacgtagcaaactacattgtgaacgaagtacaggacgtt
taccgtctacagggcgttaagatcaacgataagcacatcgaagttatcattcgtcaaatg
ttacgtaagtgtttaatcacttcaacaggcgacactgagttcttagaaggtgagcaagca
gaagtatcacgcgtgaagattgctaaccgtgagttaatcgctcaaggtaaaacacccgca
acgtttgaacgtgaattactcggtattaccaaagcttctttggcaactgaatcattcatc
tctgcagcatcgttccaggagaccactcgtgtgttaactgaagcggccgttggcggtaag
agcgatccattacgtggtttgaaagaaaacgtaatcgtaggtcgtttgatcccagcaggt
acaggttatgcttatcacaaaacccgtaacgaagaacgtgctaaaatattaagctctcgt
ggcaaagtggaaactactacagtaaccgcaagcgaagctgaaaagaacctagcagatcta
ctaaatctggctggtagccaagattaa
DBGET
integrated database retrieval system
