Shewanella frigidimarina: Sfri_0173
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Entry
Sfri_0173 CDS
T00395
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sfr
Shewanella frigidimarina
Pathway
sfr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Sfri_0173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfr03021
]
Sfri_0173
03400 DNA repair and recombination proteins [BR:
sfr03400
]
Sfri_0173
Enzymes [BR:
sfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Sfri_0173
Transcription machinery [BR:
sfr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Sfri_0173
DNA repair and recombination proteins [BR:
sfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Sfri_0173
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
DUF7960
Motif
Other DBs
NCBI-ProteinID:
ABI70036
UniProt:
Q089M9
LinkDB
All DBs
Position
182753..183742
Genome browser
AA seq
329 aa
AA seq
DB search
MQGSVTEFLKPRLVDIEQVNSTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSSKEGVQEDILEILLNLKGLAVTIEGKDEALLTLSKSGTGPVTAADITHDGD
VTIVNPDHVICHLTGNNDISMRIRVERGRGYVPASARAQTEDDDRPIGRLLVDASFSPVA
RIAYNVEAARVEQRTDLDKLVIDMTTNGTIDPEEAIRRSATILAEQLDAFVELRDVTEQA
VVEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLENWPPASLADDL
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgttacagaatttcttaaaccgcgtctcgttgatattgagcaggttaat
tcaactcgcgccaaagttacactagagccactagaacgtggttttggccataccttaggt
aacgcgttgcgtcgcatcctattgtcgtctatgcctggctgtgcagttactgaagtcgaa
attgacggcgtactgcatgaatacagcagtaaggaaggcgtacaagaagatatccttgag
atattgcttaatcttaagggattagcagtgaccatcgagggtaaagacgaggctttgctt
acattaagcaagtccggcacaggccctgttacagcagcagatatcacgcatgatggtgat
gttaccatcgtgaatcctgatcatgttatctgtcacttgactggtaacaatgatatcagc
atgcgtatccgcgttgagcgtggtcgtggttatgtgccagcttcggctcgtgcacagact
gaagacgatgatcgcccaatcggtcgtttgctggttgatgcttctttttcacctgttgct
cgcattgcttataatgttgaagcagctcgtgttgaacagcgtactgacttagacaaactt
gtgatagatatgaccacaaacggtactatcgatcctgaggaagcaattcgtcgttctgca
actattttagctgaacagctagatgcgtttgttgaactacgtgatgttactgagcaggct
gttgtagaagagaaaccggagttcgatccgattttgctgcgtcctgtcgacgatttagag
ctaactgtacgttcggctaactgtttaaaagccgaagcgattcattacatcggagatctg
gtacaacgcactgaagttgagttgcttaagacccctaacttaggtaagaaatctcttact
gaaattaaggatgttttagcgtctcgcggactgtcgttaggtatgcgtctagaaaactgg
ccaccggctagtttagctgacgacctataa
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