Shewanella frigidimarina: Sfri_0361
Help
Entry
Sfri_0361 CDS
T00395
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
sfr
Shewanella frigidimarina
Pathway
sfr00061
Fatty acid biosynthesis
sfr00071
Fatty acid degradation
sfr01100
Metabolic pathways
sfr01212
Fatty acid metabolism
sfr02024
Quorum sensing
sfr04146
Peroxisome
Module
sfr_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Sfri_0361
00071 Fatty acid degradation
Sfri_0361
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Sfri_0361
09145 Cellular community - prokaryotes
02024 Quorum sensing
Sfri_0361
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
sfr01004
]
Sfri_0361
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sfr04147
]
Sfri_0361
Enzymes [BR:
sfr01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Sfri_0361
Lipid biosynthesis proteins [BR:
sfr01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Sfri_0361
Exosome [BR:
sfr04147
]
Exosomal proteins
Exosomal proteins of breast milk
Sfri_0361
Exosomal proteins of breast cancer cells
Sfri_0361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
SH3_1
Motif
Other DBs
NCBI-ProteinID:
ABI70224
UniProt:
Q088U1
LinkDB
All DBs
Position
complement(389443..391170)
Genome browser
AA seq
575 aa
AA seq
DB search
MAILSLRNTIGIRPTITIKNMEASMENLIKTPVEMLSHWVDTQGDKVYLRQPIGGKYVDF
TWREVQQKMQQIAGSLRHLGLERGDKIAVLSKNCAEWFIVDLALMYGGYISVPVYPTANA
ETIRYVLEHSGAKAIFTGKLDHWAEQEAAVGGEILRLAMPYETMPAQYHWEQLLKLGQPL
VDEQFPTADQVMTLIYTSGSTGKPKGAIQTFTSYGWACEAVVRDLQTNTTDRLLSYLPLA
HITERVAIEGSSFYSGATVSFVESLDSFVDDIQRCRPTVFFSVPRLWTVFQLNIINKIGE
KKLKTLLKLPIISTIVKRKIKSGLGLDQSRLNGSGSAPIPPSLIQWYNNIGIDICEAWGM
TENCAYSIINYPFNAKKIGTVGRPVEGCLVRQTEAGELLVKSPGLMSGYYLQDEATAAAF
TEDGFFHTGDLCEIDADGYIDITGRVKDNFKTSKGKYVAPVPIERKLAQDTHVDLICVIG
SGLPHPIALVQLSEGSKLQPREEVRTSLKETLDGVNPHLESHEHVDAIIVVNDEWTIEND
VLTPTLKIKRHVLEKAFTAKVDGVRGAKVRWEDEL
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atggccatactaagtttacgtaatacgataggtattagacccacaataacaataaagaac
atggaagcgtcgatggaaaatttaattaaaactcctgttgagatgttgtctcattgggta
gatacgcaaggtgacaaagtttaccttcgccagccaattggcggtaaatatgttgatttc
acatggcgtgaagtgcagcagaagatgcaacaaattgcaggttcactgcgtcatttgggt
ttagagcggggcgacaaaattgctgtattatcgaaaaactgtgctgagtggtttattgtc
gatttagcattaatgtacggtggttacattagtgtgcctgtttatccaaccgcgaatgcc
gaaaccattcgttatgtgctcgaacatagtggtgctaaagctatctttaccggtaagctc
gatcactgggctgaacaagaagccgcggttggcggtgaaattctccgtttagccatgcca
tatgaaacaatgccggctcaataccattgggaacagctattaaagttaggacaaccgctt
gttgatgagcagttcccaactgcagatcaagtcatgaccctgatttacacctcgggttca
actggcaaacccaaaggcgcgattcaaacctttaccagctatggttgggcctgtgaagcg
gttgttcgtgatttacaaactaatactactgaccgactgctatcttacttacctctggca
cacattaccgaacgtgtggccattgaaggttcgtcattttactctggggcaacggtttct
tttgtggaaagcctcgattcatttgttgatgatattcaacgctgtcgcccaacggtgttt
ttctcggtaccgcgtttatggacagtattccaattaaatatcatcaacaaaattggtgag
aaaaaactcaaaaccttactcaagttgcctattattagcactattgttaaacgtaaaatt
aagagcggtttaggactcgatcaatctcgcttaaacggttctggctctgcaccaatccca
ccatctttgattcaatggtacaacaacattggcattgatatttgtgaagcatggggcatg
accgaaaactgtgcttactcgataatcaattacccattcaatgccaagaagataggcaca
gttggccgtccagttgaaggatgcttagtccgtcaaactgaagcaggtgaattattagtt
aaaagccctggcttgatgagcggctattacttacaagacgaagccaccgcagctgcattt
actgaagatggctttttccacactggcgatttgtgtgaaattgacgcagacggttacatc
gacattaccggacgcgttaaagacaacttcaaaacctcaaaaggtaagtatgttgctcca
gtgccgattgaacgtaaattggctcaagacactcatgtagatttaatttgtgttatcggt
tcaggtttaccacatcccatcgcgttagtgcagctttctgaaggttcaaaacttcagcca
cgcgaagaagtaagaacatcattaaaagagactctcgatggtgttaatccacatttagag
tcacacgaacatgttgatgccatcatcgtcgtcaatgatgagtggaccattgagaatgat
gtgttaactccgacgttaaaaattaaacgtcacgtactggaaaaagcttttaccgccaaa
gtagacggtgttcgcggcgccaaagtacgctgggaagacgagttgtaa
DBGET
integrated database retrieval system
