KEGG   Shewanella frigidimarina: Sfri_0452
Entry
Sfri_0452         CDS       T00395                                 
Name
(GenBank) UvrD/REP helicase
  KO
K03658  DNA helicase IV [EC:5.6.2.4]
Organism
sfr  Shewanella frigidimarina
Brite
KEGG Orthology (KO) [BR:sfr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sfr03400]
    Sfri_0452
Enzymes [BR:sfr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Sfri_0452
DNA repair and recombination proteins [BR:sfr03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    Sfri_0452
SSDB
Motif
Pfam: UvrD-helicase AAA_19 UvrD_C Zn_ribbon_Top1 UvrD_C_2 AAA_12 AAA_30 Zn_ribbon_recom MurB_C
Other DBs
NCBI-ProteinID: ABI70314
UniProt: Q088K1
LinkDB
Position
516325..519312
AA seq 995 aa
MSSENSVSFIPHSWFGHLYQRDVNAIKLTQEGITFIPGHGQFLARFRHNNKQLIIGQLSW
QQLDHPPLFSASLLGNLLSFNAAGTHYQIPFLSYFAKSHFKQQVELLWALSHQKSLCDLI
LRVEKATSSRYLRQSLVDKMRARIEREYFRWFPWSEGAELPANIRTALTQLHDFYHWNKA
DIERLRESYIQSQLLAFAGFFDHVESNPLTNKQRRACIIDDDSNLLLAGAGTGKTSVMVG
RAGYLVNSGQAQANDILLLAYGKKAAMEMDLRIKHKLGSDDIKASTFHSLGLKIIADVEG
VKPSLSAWVNDEPAKDKWVHDRLEVLIKNESYRKQLFDYFSRYYYVEKSPFEFSTQGEYF
EYLNDNDIRSLKGERVKSFGELHIANWLFTNGIEYQYEAKYEFDVSTVDFRQYQADFYLP
EYEVYIEYYGIDEANNTVPFIDQAAYLTSMEWKRQLHHQRQTNCIELFYYQHKKSQLINK
LEQALTVFKVNYSPLPDEAILATLYELGRVTELAKLFSQLIGLYKAACIDEAGLEKVFAN
ATQTRKAFELLQPILQQYQQYLSAHGDIDFEDMIAKALAYLQSGQYVSPWQYIMVDEFQD
ISEPRARLVRALRDSRTKKGNSDTSLFCVGDDWQAIYRFSGADVRLTTQFKRYFGHASET
YLDLTFRFNNRIGEVASAFVSKNPHQLNKDIHSLVQVAKPAVSILRRGTNEGATKDEPSN
NALEQVLNALSVRVTQAVDKLKAKPTVYLLARFWFQLPDKDMLRQLTAKYPMFVIECLSF
HASKGKEADYVVIMGMTQGIHGFPSKKITPPLLDAFLPKAENFEFAEERRLFYVALTRAK
HRVYVIADMTNVSPFIVELIQQDYAVEQQEFSTSLVQSLFEQINCVRCTTGILKPRVGKF
TSFFSCSHFPLCDHKEAGCDECGSPMTRKRFVGFKVCLNDSCAHMAPICNVCGSEMSLRE
SARGAFWGCKNYRGNNVPSCSNTINTAKISPQQVQ
NT seq 2988 nt   +upstreamnt  +downstreamnt
ttgtcatcagaaaattcagttagctttatccctcatagttggtttgggcatttgtatcag
cgtgacgtaaatgcgatcaaattgacgcaagagggtattacctttatacctggccatggc
caatttttagcaagatttcggcataacaataagcaacttattattgggcagttatcatgg
cagcaattagatcacccgccactgtttagtgccagtttactcggtaacttattgagtttt
aatgctgcaggtacccattatcaaattccatttttaagttattttgctaaatctcatttt
aagcaacaggtcgaattactctgggctttatctcatcaaaaatcgctgtgcgatttgata
ttacgagttgaaaaagccacatcgagtcggtatttacgccagtcattagtagacaaaatg
cgcgctagaatcgaacgtgagtactttcgctggttcccttggagtgaaggggctgagcta
cccgctaatatacgtaccgcattaactcaattacacgatttttatcactggaataaagcg
gatatagagcgcttacgtgaaagctatattcaatcacagttgcttgcatttgcgggcttt
tttgatcatgttgagtcaaatccactaaccaataaacagcgtcgagcatgtattatcgat
gatgatagtaatctgcttctcgcgggcgctggaacggggaaaaccagcgtaatggtgggc
agagcaggttatctagtgaatagtggtcaagctcaagctaatgacattctattgcttgct
tatggcaaaaaagccgccatggaaatggatctgcgaattaaacataagctgggcagtgat
gatattaaggccagtacttttcacagtttaggcctgaaaattattgccgatgttgaaggc
gtgaaacctagcttatcagcgtgggtaaatgatgaacccgccaaagacaaatgggtgcat
gatagattagaagttttgattaaaaatgaatcttatcgtaaacaactttttgactatttt
agtcgttattattacgttgaaaaaagcccattcgaattttcaacacaaggtgagtatttt
gaatatttaaatgataacgacattcgctcattgaaaggtgaaagggtcaaaagttttggt
gagttgcatatcgccaattggctgtttaccaatggcattgaatatcaatatgaagccaag
tatgaatttgatgtcagcacggttgattttcgccagtatcaagctgatttttatctacct
gaatatgaggtttatattgaatattatggcattgatgaagccaataatacggttcctttt
atcgatcaagctgcatatttaacatcaatggaatggaaacggcagttacatcatcagcgc
caaaccaactgcatcgaattattttattatcagcacaagaaaagtcagttaattaataag
cttgaacaagctttaacggtatttaaggttaactattcacctttacctgatgaagcgata
ttggcaactctttatgaactgggacgagtcactgagctggcaaaattgtttagccagctc
attggcttgtacaaagccgcttgtattgacgaggccgggctggaaaaggtatttgccaat
gctacccaaacgcgtaaagcatttgaattactccaacccattttacagcagtatcaacag
tatttatctgctcacggtgatatcgactttgaggacatgatagccaaagcgctcgcatac
ctgcaaagtggtcaatatgtcagcccatggcaatatatcatggtcgatgagtttcaagat
atttcagaacccagagcacgtttagtgcgagccttgcgagattcgcgcacgaaaaaaggt
aacagcgatacttcattattttgtgttggcgatgattggcaggctatttatcgctttagt
ggtgcggatgtccgtttaacgactcaatttaaacgttattttggccatgccagcgaaacg
tatttggatcttacttttagatttaataaccgtatcggtgaagtggctagcgcttttgtg
agtaaaaatccgcatcaactcaacaaagatatccattcattggtacaagttgccaagcct
gcagtatcaatacttcgtcgtggtaccaatgagggcgcaactaaagatgagccgagtaac
aacgcattagagcaagtcttaaatgctctgtccgtccgcgttactcaagctgttgataag
cttaaagctaaaccgacagtatacttactggcacgtttctggtttcagttgccagataaa
gacatgttgcgtcagttaacggctaaatacccgatgttcgtgattgagtgtttatcgttt
catgcttcaaaaggtaaagaggccgattatgtggtgatcatgggaatgacccaaggcata
catggatttccgtcgaaaaaaataacgccacctttacttgatgcgtttttacctaaagct
gaaaattttgagtttgcagaagaacgacgtttattttatgtcgcgctaacccgtgcaaag
caccgagtttacgttatcgccgatatgaccaatgtgagcccatttattgtggaactgatc
caacaagattatgccgttgaacaacaagaatttagtacgtctttagtgcaatccttgttc
gaacaaattaactgtgtccgatgtacaactgggatattaaaaccacgagtgggcaagttc
acatcattcttttcttgctcacactttccattatgcgatcacaaagaagcaggctgtgac
gaatgcggcagtccgatgacacgcaaacgttttgtcggtttcaaggtatgcctcaatgac
agttgtgcccatatggcgccgatatgtaacgtttgtggcagtgagatgagcttaagagaa
agtgctagaggggctttttggggctgcaaaaattatcggggtaacaacgtgcctagttgt
agcaataccattaatacagccaaaatatctccgcaacaggtgcagtag

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