Shewanella frigidimarina: Sfri_0588
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Entry
Sfri_0588 CDS
T00395
Name
(GenBank) WD-40 repeat protein
Organism
sfr
Shewanella frigidimarina
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_EML
Beta-prop_EML_2
WD40
WDR55
EIF3I
ANAPC4_WD40
Beta-prop_NWD2_C
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_SPT8
Beta-prop_NUP159_NUP214
Beta-prop_Vps41
WDR90_beta-prop_4th
Pep3_Vps18
Beta-prop_HPS5
Beta-prop_Nup120_160
KNTC1_N
Beta-prop_IFT140_1st
PEP5_VPS11_N
WD40_2
Beta-prop_RSE1_2nd
Beta-prop_WDR75_1st
WD40_like
Beta-prop_IFT122_2nd
DUF4240
Motif
Other DBs
NCBI-ProteinID:
ABI70449
UniProt:
Q087W6
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Position
complement(682064..683005)
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AA seq
313 aa
AA seq
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MMAVSGCNQAEVMKTPDNIQPLVQETLIDGVLSNDASMAVTLGRSRTLSIWDVATSQLIH
QWSDDDFDETNYLLALSGNKQFLATAGKQKISVFNLETGKLDIRWPAQGFNPDASISSLF
LSQTGSTILVGMNDGSITVIQRSSMTMSLFKQHSAAVNHVELSGFEQQVLSTGLDGDVHI
WAAYSGELISSFSRPQQITSVSFDDANRRLFIADALDNNVIIDTQTTQPVSHLDYLERYR
YFRQALFVNHGKNLITATSKQSVIYWDASSGKELSHWDITAYNAGTTVFSMIMKPNGKLL
TLSSDGALETWSL
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgatggctgtctctggctgcaatcaagcggaggtgatgaaaacccccgataatattcaa
ccacttgttcaagaaacgctaattgatggcgtactgtctaacgatgccagtatggctgtc
acattaggcagaagccgtacattatcaatttgggatgtagcaacaagccaactaatacat
caatggtctgacgatgactttgatgaaaccaattatctgctggcgttatcaggtaataaa
caattccttgcgactgctggcaaacaaaaaatatccgtttttaaccttgagacaggcaaa
ttagacatacgttggcccgcccagggatttaatcccgatgccagtatttcgagccttttt
ctgagccaaacaggcagcactattttggtgggaatgaatgatggttcaattacagtgata
caacgaagtagcatgacaatgtcattgtttaaacaacacagcgccgccgttaatcatgtt
gagctatcgggctttgagcagcaggtattatcgactggacttgatggtgatgtacatatt
tgggctgcttatagcggtgagttgatcagcagtttctcacgtcctcaacaaatcaccagc
gtgagttttgatgacgctaatcggcgcttatttattgccgatgcactcgataacaatgtc
attatcgatacccaaacaacgcagccagtaagtcatctagattaccttgaacgctatcgc
tattttcggcaggcgttattcgtcaatcacggcaaaaacttaattaccgcaacgtcaaaa
caaagtgttatctattgggatgcctcatctggaaaagagctttctcattgggatatcacc
gcctataacgctggcaccacggtattttcaatgataatgaaacctaatggtaagctatta
accttaagctcagatggcgcacttgagacgtggagcttataa
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