Shewanella frigidimarina: Sfri_0777
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Entry
Sfri_0777 CDS
T00395
Name
(GenBank) deoxyribodipyrimidine photolyase-related protein
KO
K06876
(6-4)DNA photolyase [EC:
4.1.99.13
]
Organism
sfr
Shewanella frigidimarina
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfr03400
]
Sfri_0777
Enzymes [BR:
sfr01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.13 (6-4)DNA photolyase
Sfri_0777
DNA repair and recombination proteins [BR:
sfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
Direct repair
Sfri_0777
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DPRP
Motif
Other DBs
NCBI-ProteinID:
ABI70633
UniProt:
Q087D2
LinkDB
All DBs
Position
complement(911993..913579)
Genome browser
AA seq
528 aa
AA seq
DB search
MTTLYTNASPTLLPQTSTLRLILGDQLNASHSWFKQVDPNVVYLIAELGQEASYVTHHVQ
KVCAFFASMAQFAQALSKSGHQVMYLTLDDTQHYADLPALLENITTTQQLTIFEYQQPDE
YRLAQQLSELALPKVSKNSYDTEHFLLPFADIQREFTPNKHVKMEFFYRRMRKRFNVLMQ
EGEPLGGQWNFDQQNRASFKKNDLADVPAPLVFANDVSDILARLKRHNINTIGKAESQLL
WPVNRRQSRELLDFFCQHLLIRFGHFQDAMTENSRADWSLYHSRLSFALNAKIISPSEVI
NKVIAHWQAHQHDISLAQVEGFVRQILGWREYVRGIYWCNMPNYATKNALQALRPLPGYF
WTANTKMNCMHHAIKQSLDYAYAHHIQRLMVTGCFSLLAGINPDEVDHWYLGIYIDAIEW
VEMPNTRGMTQFADGGIVATKPYAASGNYLNKMSDYCKSCHYNVKLKTEHNACPFNSLYW
HFIQRHQDQFKRNPRMAMVYKNWQKMDVHTQQAIINKADSLLENIESL
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgctttacaccaatgcttcaccaacattattgccgcaaaccagcacattgaga
ctcatcttgggcgatcaactcaatgcgtcacactcttggtttaaacaagtcgatcctaat
gtggtgtatttgattgccgagttgggacaagaagcaagttatgtcactcatcatgtgcaa
aaggtctgcgccttttttgcctctatggcgcaatttgcacaggccttatccaagagtggt
catcaagtgatgtacctaacattagatgacacccagcactatgcagatctccctgcatta
cttgaaaacatcaccacaacccagcaactgacgatatttgaatatcaacagcctgatgaa
tatcgcttagcgcaacaattgagtgaactcgcactgccaaaggtgagtaaaaacagctac
gacacagaacatttcttactgccatttgccgatattcagcgcgaatttacaccgaataaa
catgtgaaaatggagtttttttatcgacgcatgcgcaaacgctttaatgtattaatgcaa
gagggtgaaccattaggtggccaatggaattttgaccagcaaaaccgtgcgagctttaaa
aagaatgatcttgctgatgttcctgcgcccttggtatttgctaacgatgtcagtgatatt
ttagcccgccttaagcgccataatatcaacaccataggcaaggcagaaagccaattgtta
tggccagtgaatcgacgccaatcacgtgagttactcgactttttttgccagcatttattg
atccgctttggtcatttccaagatgcgatgaccgaaaatagccgtgcggattggagctta
tatcattcaaggctatcgtttgcgcttaacgctaaaattatttcccccagtgaagtgatt
aataaagtcatcgcgcattggcaagcgcatcaacatgatatttcactggctcaagttgaa
ggttttgttaggcaaatacttggctggcgtgaatatgttcgcggtatttattggtgcaat
atgcctaactacgccactaaaaatgccttacaagcactgcggccgctgccagggtatttt
tggaccgccaacaccaagatgaattgcatgcaccacgccataaaacagtcactcgattat
gcttatgcccaccatattcaaagattgatggtgactggctgctttagtttactcgcgggt
atcaatccagatgaagtcgaccactggtatttaggcatttacattgatgccatcgaatgg
gtcgaaatgcccaatacgcgcgggatgactcaatttgctgacggcggaattgtggccaca
aaaccttatgccgccagcggtaactatttgaacaaaatgagcgactattgcaaaagctgc
cattacaatgtcaaactcaagacagaacataacgcttgcccattcaacagtttatattgg
cattttattcagcggcatcaagaccaatttaaacgtaaccctcgaatggcaatggtatat
aaaaactggcaaaaaatggatgtgcacacgcaacaggccattattaacaaagccgatagc
ctattggaaaatatagaaagcttataa
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