Shewanella frigidimarina: Sfri_0779
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Entry
Sfri_0779 CDS
T00395
Name
(GenBank) Deoxyribodipyrimidine photo-lyase type I
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
sfr
Shewanella frigidimarina
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfr03400
]
Sfri_0779
Enzymes [BR:
sfr01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
Sfri_0779
DNA repair and recombination proteins [BR:
sfr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
Sfri_0779
Prokaryotic type
Sfri_0779
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Bac_GDH_CD
Motif
Other DBs
NCBI-ProteinID:
ABI70635
UniProt:
Q087D0
LinkDB
All DBs
Position
complement(913721..915235)
Genome browser
AA seq
504 aa
AA seq
DB search
MPDTIKQAINIVWFKRDLRLSDHQPLVDAFNHDLPCLLIYTFEPFMLADSHYNERHWRFV
WQSLQDMNQQLLRFNGQVYMFSMPMIDLLDEISQTFEIKNIYSHQEIGLHNSFERDKTVA
RWCNQQPVSWQQSPTGAVVRGRKNRQAWDQHWQQVMNSPIAIPNWQQCQLQKLDNYQEPT
LDNAIMAHNDQFQIGGPKAARTILSSFLTHRGKDYQRSISSPSLSRTHCSRLSPYLAWGN
ISLKQVYQATLTRYNEVQTSNKAWRKPLLAMMSRLHWHCHFMQKFESQCSMEFTPVNPGY
VDYPYRTDDKVQQDIQRWADGQTGIPIIDACMRCLKETGYINFRMRAMLVSFVTHHLNIA
WQHASLPLANYFLDFEPGIHYPQLQMQASVTGINTIRLYNPVKQSQDQDPRGEFIRLWCP
ELTNLPNEYIHQPWQQPPMEAIFNDIILGRDYPEPMIDLTQASQTARDRLWSYREQPQVK
QHIVAVLTRHVRPKPKQKKARHDT
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacacaatcaaacaagctattaatattgtctggtttaaacgcgacttgcgcttg
tctgatcatcagccgctcgtcgatgcgtttaatcacgatttaccctgcttgctcatttat
acctttgagccatttatgctggctgactcgcattataatgaacgccattggcgctttgtg
tggcagtcgctgcaagatatgaatcaacaactgctccgatttaacggacaggtgtatatg
ttcagtatgccgatgattgacttactggatgagatatcccaaacatttgaaattaagaat
atttatagtcatcaagagataggtttacacaacagctttgaacgcgataaaacggttgct
cgctggtgtaatcaacagccagttagttggcagcagtcgcctactggagctgtagttcgt
ggccgaaaaaatcgtcaggcatgggatcaacactggcaacaagtaatgaacagccctatt
gccatccccaactggcaacaatgtcagttacaaaaactcgataactatcaagagccgact
cttgataatgccatcatggcacacaatgatcagtttcaaataggtggccccaaagcagcc
agaacaatactgagcagttttttaacccatcggggtaaagactatcaacgcagtatttca
agcccgagcttaagtcggacccattgttcacgcttatcgccttatttagcatggggaaac
atcagtctaaagcaagtatatcaagcgacattaacacgttataacgaggtgcaaaccagc
aacaaagcgtggagaaaaccgttattggcgatgatgtctcgtttacattggcattgccat
tttatgcaaaaatttgaaagccaatgcagcatggaatttaccccggttaaccctgggtat
gttgattacccctaccgtaccgacgacaaagtgcagcaagatattcaacgctgggctgac
ggccaaacggggatccctattatcgatgcctgtatgcgttgtttaaaagaaaccggctat
atcaactttagaatgcgcgccatgctagtcagctttgtgactcaccatctcaatatagcc
tggcagcatgccagcttaccgctagccaattattttctcgatttcgaacccggcatccat
tatccgcaactgcaaatgcaagcctcggtcacaggtattaacaccataaggttatataac
cccgtaaagcagtcacaagaccaagacccacgcggtgagtttattcgattgtggtgccca
gagctcaccaatttacccaatgagtatattcatcaaccttggcaacaaccgcctatggaa
gcgatttttaacgacattatcttaggtcgtgactatccagagccaatgattgatttaact
caagcatcacaaactgcccgcgatcgtttatggtcgtatcgcgaacaacctcaagttaaa
cagcatattgttgcggtattaacccgtcatgtacgcccaaagcccaaacagaagaaggct
cgccatgacacataa
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