Shewanella frigidimarina: Sfri_0792
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Entry
Sfri_0792 CDS
T00395
Name
(GenBank) formate dehydrogenase, alpha subunit
KO
K00123
formate dehydrogenase major subunit [EC:
1.17.1.9
]
Organism
sfr
Shewanella frigidimarina
Pathway
sfr00630
Glyoxylate and dicarboxylate metabolism
sfr00680
Methane metabolism
sfr01100
Metabolic pathways
sfr01120
Microbial metabolism in diverse environments
sfr01200
Carbon metabolism
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
Sfri_0792
09102 Energy metabolism
00680 Methane metabolism
Sfri_0792
Enzymes [BR:
sfr01000
]
1. Oxidoreductases
1.17 Acting on CH or CH2 groups
1.17.1 With NAD+ or NADP+ as acceptor
1.17.1.9 formate dehydrogenase
Sfri_0792
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Molybdopterin
Molydop_binding
Pyr_redox_2
Fer4_20
Molybdop_Fe4S4
Pyr_redox
Fer2_4
Pyr_redox_3
NAD_binding_8
Fer4_7
DAO
Amino_oxidase
Fer4_6
Fer4
FAD_oxidored
Fer4_21
Fer4_8
HI0933_like
NAD_binding_7
Thi4
FAD_binding_2
Fer4_18
FAD_binding_3
Fer4_17
Fer4_10
AlaDh_PNT_C
Fer4_9
Fer4_2
Fer4_16
ApbA
Lys_Orn_oxgnase
FMO-like
Fer4_15
Fer4_22
Motif
Other DBs
NCBI-ProteinID:
ABI70647
UniProt:
Q087B8
LinkDB
All DBs
Position
complement(929140..933360)
Genome browser
AA seq
1406 aa
AA seq
DB search
MIDITIDGTTLSLPKADSLLKAAKNAGINIPSLCDYSHRQERQHCNLCQVQIKNHDGSLR
CVRACETPLETGLEVITQSSHLSHLRQQALKDILSDHFADCEAPCQTACPAGVDVQSYLY
HIGRGDHKEAVKVIKQTLPLPLSIGRVCPAFCEAQCRRGLVDEPVAIRQLKRHAADLDLQ
DAESYVPPKAPATNKRIAIIGSGPAGLTAGYYLSNNGHDVTIMESAPKAGGWLRYGIPEY
RLPKDILDKEIELLTRNGLKIETGVELGRDTNLTELVANYDAVCLAIGAQKAVPMNYPGS
DLIGCYLGVDYLRDYCTDKKFITGKKVAVIGGGNTAIDCARTAVRDGADVTLIYRRSRDE
MPAEPYEIHEAEEEGVKFHFLTNPLENHSDDQGRVKSVTFAKMALGEPDESGRRSPKATG
ETFEEAFDTVIPAVSQQVDLAFLDQPENQIDTGHIALTRWHTFLGCEQTMSAGVEKLFVI
GDSRTGPGTAVGAVADGRKAAEAIEGLLTEGLTCHLEPGLFNSRKANKTASLSAEIYPET
AKRRRLKMPELNQLNRALNFAEVELGFIPDEAMKEAMRCLECACQANTDCKLRDYATEYK
VDGKTLDQTQARKFKVDNSAPFITFDANRCISCAACIDACHQQSGHNVISFEANSYQALP
DAATTGISRNAPRVGFTASMNDSDCVQCGNCVQVCPTGALVDARDKTQGSDRALTKTSTV
CTYCGVGCRVELHVDQDKNHVMRVSGDTQSVVNEGMLCVKGRSGFDFLNSPKRLTTPLIR
KNGQLQPASWSEAISYIAQQLQPIKDAAGPSKFAALSSAKCTNEENYLMQKFTRSIMGTN
NIDHCARLCHSSSVAGLSDTIGGGAMTNDIPSIKDSDVILIIGSDTTSAHPIIASHIKRA
VSQHGARLIVADPKRTAIADSAHLYVSHKPGTDVMLLNAIMQQIIINNWQDMHYINSRIE
DYELLKQEVMKPDYSLVNAALITGVNAEDIAAMAKMIGTANKTALYYAMGITQHTSGYDN
VVSTSNLQLLCGNIGVTGGGLNPLRGQSNVQGACDMGALPNYYPGYQQVDNPLNNVKFAK
AWGNTSLNSEIGLAATEIMQAIVKGKLDALYVLGENPVLSDPDQAHVIAALSKIKFMLVQ
DIFLTETAQMAHVVLPATAFAEKDGHFTNTERRVQQLRVALTPPGDAIVDWKIIQMIANS
LDANWHYHSTKDIWQEINHVTPQYQGLTWQRLEHKVDGIQWPCFDENHPGTPILHTETFL
RGKGRMMPVSYRLPAEMPDSEYPLTLSTGRLLEQFHTGTMTRKTPELDIKGSPRVMISVF
DAEQLGVNNGDMLKLSTRRGEIDIAAFVTKRAQVGVLFLPFHFAEAAANKLTINALDPIA
KIPEYKVCAVKAEKSLQPRGATLLGR
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atgattgatatcactatcgacggaacaacactttcgcttcctaaagcagacagcttatta
aaggcagcaaaaaacgccggtattaacatccctagcttatgtgattattctcatcgccaa
gagagacaacactgcaatttgtgccaagtacaaatcaaaaaccatgatggtagtttacga
tgtgttcgcgcctgtgaaacaccgctagaaactggtttagaggtcattactcagtcgagc
cacttaagccatcttcgtcaacaagcactcaaagatattctgagtgatcactttgcggat
tgtgaagcaccttgccaaactgcctgtcctgccggcgttgacgtgcaatcgtatctgtat
catatcggcagaggcgatcataaagaagccgtcaaagtcatcaagcaaaccttaccttta
cccttgtctattggccgtgtttgccccgctttttgtgaagcccagtgtcgccgcggactg
gtagatgaacctgtggcgattcgtcaattaaaacgtcatgcagcagacttagatttacaa
gatgcagagtcttatgttcctccaaaagcaccagccacaaacaagcgcattgccattatc
ggcagtggccctgcaggattaaccgcgggttattatttgtctaataatggccacgatgtg
accattatggagtcggctcctaaagctggaggctggttacgttacggtattcctgagtac
cgcttacctaaagatatactcgataaagagatcgaactgctcacccgcaacggacttaaa
attgaaacgggagttgaactgggtcgtgataccaatttaaccgaattagtggccaattat
gatgcggtttgcctcgcgattggtgcgcaaaaagccgtgccaatgaattaccctggcagt
gatttaatcggttgttatttaggtgtggactatttacgcgattattgcaccgacaaaaaa
ttcattacaggcaaaaaagtggccgtcattggtggcggtaacactgcgattgattgcgct
cgaaccgctgtgcgagatggtgcagatgtgaccttaatctatcgccgtagccgtgatgaa
atgccagcggagccctatgaaatacatgaagcagaagaggaaggggttaaatttcatttt
ctcactaatcccctggaaaaccacagcgatgaccaaggccgggttaaatccgtcaccttt
gctaaaatggcgctcggcgagcccgatgaatctggtcgccgctctcccaaagcgactgga
gaaacctttgaagaagcattcgacaccgtaatacctgcggtatctcaacaagtggattta
gcctttttagaccagccagaaaatcaaatagacactggtcatattgccctcacccgctgg
cataccttccttggctgcgagcaaaccatgtctgcaggggtagaaaaactatttgttatc
ggtgactcccgcactggccctggtactgctgttggtgcggtagcagatggccgaaaagcc
gctgaagccattgaaggattgttaactgaaggcttaacttgtcatttagaacctggacta
tttaactcacgaaaggccaacaaaacagcctcgttatctgctgagatatacccagagaca
gccaagcgtcgccgcttaaaaatgccagagctaaaccagctcaatcgagcgcttaacttt
gccgaggtagaactaggattcattcccgatgaggcaatgaaagaagcgatgcgctgtttg
gagtgcgcttgccaagccaataccgattgtaaattacgcgattatgccaccgaatataaa
gtcgacggaaaaacactggatcaaactcaggcgcgtaaatttaaagtcgataacagtgcg
ccttttattactttcgatgctaatcgctgtatcagttgcgccgcttgtattgatgcttgc
catcaacaaagtggtcataacgttatcagctttgaagccaatagttatcaagcactaccc
gatgctgcaacaacaggcattagccgcaacgcccctcgtgttggctttactgcgtcgatg
aatgacagcgattgtgtgcaatgcggtaactgtgttcaagtttgccctactggcgctttg
gttgatgcccgcgataaaacccaaggtagcgacagagcgttaaccaaaacctcaaccgtg
tgcacatattgtggcgttggttgccgggttgaactgcatgtcgatcaggacaaaaatcat
gtaatgcgagtatctggcgatactcaatcagtggtcaatgaaggcatgttatgtgttaaa
gggcgctctggttttgattttttaaacagtcctaaacgccttacaacgccattaattcgc
aaaaatggtcagctgcaacccgcctcttggtctgaagccattagttatatagcacagcaa
ctgcaaccgattaaagatgccgctgggccaagcaagtttgctgcattgtcttcagctaaa
tgcaccaatgaagaaaactatttaatgcaaaaattcacccgtagcattatgggcaccaac
aacattgatcactgcgcacgattatgtcattcatcgtctgtcgcagggctatccgatacc
attggcggcggcgcaatgaccaatgatattcccagcattaaagactcagatgtgatttta
attataggatccgataccaccagcgcccaccctattatcgcctcgcatattaaacgagcc
gttagccaacacggcgcgcgcttaattgtcgcggacccaaagagaacggctattgcagac
agtgcccatttatatgtatcacataaacctggcacagatgtgatgctactgaatgccatc
atgcagcaaattatcatcaataactggcaagacatgcactacatcaatagccgtattgaa
gactatgaattgctcaagcaagaagtgatgaagcctgattacagcttagtcaatgcagcg
ttaattactggtgtaaatgccgaagacattgccgctatggctaaaatgattggcacagca
aacaaaactgccttgtattatgccatgggaattactcaacatacctcaggttacgacaac
gttgtatccacctccaacttgcaattgttgtgtggcaatattggcgtaacgggcggcgga
ctaaacccactacgtggccaaagtaatgttcaaggtgcttgtgatatgggcgcgttaccc
aattattatcccggttatcagcaagtcgataacccactcaataacgttaaatttgccaaa
gcttggggcaatacatcgctaaattcagagataggattagcagcaacagaaatcatgcag
gcgattgtgaaaggtaaactcgatgctctgtatgttttgggagaaaacccagtgctaagc
gatccggaccaagctcatgtcatcgctgcactatccaaaattaaatttatgctggtgcaa
gatatctttttaaccgaaaccgcgcagatggctcatgtggtattacccgcaaccgccttt
gccgaaaaagatggccatttcaccaatacagaacgtcgggtacaacaattacgtgtcgcg
ttaacccctccgggggatgcgattgtagactggaaaattatccaaatgattgccaacagc
cttgatgctaattggcattaccacagcaccaaagatatttggcaagaaattaaccacgtc
accccgcaatatcaaggccttacctggcaacgacttgaacacaaggtagatggtatacag
tggccatgctttgatgaaaaccatcctggcacaccgattttgcataccgaaacattttta
cgcggtaaaggcagaatgatgccagtgagttatcgactacctgccgaaatgcccgatagc
gaatatccattaaccctttcaacaggccgtttactggaacaattccatactggcactatg
acgcgcaaaaccccggaactggatattaaaggctcgcccagagtaatgatttcggttttt
gatgccgaacaattgggagtcaataacggtgatatgttgaaactgagtactcgccgcgga
gaaatagatatagccgcctttgtgactaagcgggctcaggtaggagtattatttttacca
ttccactttgccgaagccgcagccaataaactgaccattaatgcattggatcccattgca
aaaattccagaatataaggtgtgtgctgttaaagcagaaaagtcactgcagccaaggggc
gctacgctgctaggtcgctag
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integrated database retrieval system
