Shewanella frigidimarina: Sfri_0992
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Entry
Sfri_0992 CDS
T00395
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
sfr
Shewanella frigidimarina
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sfr03016
]
Sfri_0992
Enzymes [BR:
sfr01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
Sfri_0992
Transfer RNA biogenesis [BR:
sfr03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Sfri_0992
Prokaryotic type
Sfri_0992
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
ABI70845
UniProt:
Q086H0
LinkDB
All DBs
Position
1159014..1159967
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AA seq
317 aa
AA seq
DB search
MARRPKGRFIDGIVLLDKDTGMSSNFALQRVKRFFNANKAGHTGALDPLATGMLPICLGE
ATKFSQHLLDSDKRYLVTAKLGQRTDTSDSDGEVVQTRPVNVTQALLDEKLAFFRGTTQQ
IPSMYSALKYQGQPLYKYAREGIEVPRESRPITVFELNFIKLEGDELTLDIHCSKGTYIR
TIIDDLGEMLGCGAHVVMLRRTQVAEYPYEKMVTLAQLEALLEQAHRQDVAPQTLMDPLL
LPMDTAVAKFAEINLPEAMLYYVMQGQAIQAAGLKPDELVRITIGDERRFVGMGIMNDDG
LLAPKRLIVIHDNDAAE
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtcgccctaaaggtcgcttcatcgacggaatcgtattactcgataaagatact
ggcatgagctctaattttgccctgcaaagagtaaagcgtttttttaatgccaataaagct
ggccatacaggtgctttagacccgttagcaacaggtatgttgcctatttgcctgggagaa
gcgactaagttctctcagcatttattagattcggataagcgctacctggtgacagctaaa
ttgggtcaacgtactgacacaagtgattcagatggggaagtcgtgcaaacgcgccctgtt
aacgttactcaagcattacttgatgaaaagctcgcattttttcgaggaaccactcagcaa
ataccgtcaatgtattcggcattaaaataccaaggtcagcctttgtataaatatgctcgt
gaggggattgaagttccacgtgagtcgcgacctattaccgtgtttgagctaaattttatt
aagcttgaaggtgatgaattaaccttagacattcattgttctaaagggacttacattcgc
accattattgatgatttaggtgaaatgcttggttgtggagcacatgtggttatgttgcgt
cgtactcaagtcgccgaatatccttatgaaaaaatggtaacgcttgcccaattagaagcg
ctacttgaacaagctcatagacaagatgttgctcctcagaccctaatggatccgttattg
ttaccaatggatactgcagtggctaaatttgctgaaattaacttgcctgaggcgatgcta
tattacgtcatgcaagggcaagcaattcaagcagcgggacttaagcctgatgaattagtg
cggatcactattggcgatgaacgccgatttgttggtatgggtatcatgaatgatgatggt
ttattagcacccaaacgtttaattgtgatccacgataatgatgccgctgagtag
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