Shewanella frigidimarina: Sfri_1056
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Entry
Sfri_1056 CDS
T00395
Name
(GenBank) Pseudouridylate synthase
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
sfr
Shewanella frigidimarina
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sfr03016
]
Sfri_1056
Enzymes [BR:
sfr01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
Sfri_1056
Transfer RNA biogenesis [BR:
sfr03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Sfri_1056
Prokaryotic type
Sfri_1056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
SLC35F
Motif
Other DBs
NCBI-ProteinID:
ABI70909
UniProt:
Q086A6
LinkDB
All DBs
Position
1243170..1244243
Genome browser
AA seq
357 aa
AA seq
DB search
MKELHYLFGKPISQADLRTYNSDFIVKEILPFTPTGEGEHHMLHVRKNGMNTVYVAEILA
KFAKVHPKEVTFAGQKDKNAITEQWFGIRIPGKETPEWTQLNDDKLTILSSSRHSKKLRI
GALLGNRFVLTLRNINDTADVESRLQQIAKLGVPNYFGEQRFGHDGKNLILGRQMLSGGR
NIKDRHKRSMYLSAVRSNVFNQVVSFRLANHQADTVAGDCVMLAGSKSYFTAEVWDEVLN
NRLAEKDIQLSAPLWGRGTPLAQGEALALELTPLAELSADLQGLEEAGLSQERRPLLLEP
QGMKWQFDADTLTVEFVLPAGSYATSVLRELADYQDVQESQRKVMVAEQQAQKNEEC
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaattacattacctatttggtaaaccaataagccaagctgatttacgtacctat
aacagcgactttatagttaaagaaattttgccttttactccaacaggggaaggcgagcat
catatgcttcatgtacgtaaaaatggcatgaataccgtttatgttgccgagatattagct
aaatttgcgaaagtgcatccaaaagaagtgacttttgcaggtcagaaagacaaaaatgcc
atcactgaacaatggttcgggatacgcattcctggtaaagaaacgccagagtggacgcag
ctgaatgatgataaattaaccattctgtcgagcagtcgtcacagtaaaaaattgcgtatt
ggcgccttgctaggaaatcgatttgttctgacattacgcaatatcaatgatacggccgat
gtcgagtctcgtttacagcagatagcaaaactcggagtccctaattactttggtgagcag
cgctttggccacgatggtaaaaacctgatcttaggcagacaaatgctgagtggtggtcgt
aacataaaagatcgccataaacgcagcatgtatttatcagctgtgcgttctaatgtgttc
aatcaggtggtgtcatttcgattagctaatcatcaggcagataccgtcgcgggtgattgc
gtgatgttagctggtagtaaaagctattttaccgccgaagtatgggatgaggtacttaac
aaccgcttagctgaaaaagatatccaactttccgctccactttggggaaggggaacgcca
ttagcacaaggtgaggcattagctttagaattaacgccattagctgaattatcggctgat
ttacagggactcgaagaagcaggtttatcacaagagagacggccattattacttgaacct
caaggaatgaaatggcagtttgatgctgatacgctcactgttgaatttgtattacctgca
gggagttatgccacctcggtgttacgcgaacttgctgattatcaagatgtccaagagtca
caacgaaaagtcatggttgccgagcaacaagcacaaaaaaatgaagagtgttaa
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