Shewanella frigidimarina: Sfri_1178
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Entry
Sfri_1178 CDS
T00395
Name
(GenBank) sigma54 specific transcriptional regulator, Fis family
KO
K10941
sigma-54 dependent transcriptional regulator, flagellar regulatory protein
Organism
sfr
Shewanella frigidimarina
Pathway
sfr02020
Two-component system
sfr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Sfri_1178
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Sfri_1178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfr03000
]
Sfri_1178
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
sfr02035
]
Sfri_1178
Transcription factors [BR:
sfr03000
]
Prokaryotic type
Helix-turn-helix
Other families
Sfri_1178
Bacterial motility proteins [BR:
sfr02035
]
Flagellar system
Flagellar assembly proteins
Others
Sfri_1178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
FleQ
Sigma54_activ_2
HTH_8
HTH_50
AAA_16
AAA_5
Mg_chelatase
AAA_30
AAA_7
bpMoxR
AAA_2
AAA
Motif
Other DBs
NCBI-ProteinID:
ABI71031
UniProt:
Q085N4
LinkDB
All DBs
Position
1386925..1388355
Genome browser
AA seq
476 aa
AA seq
DB search
MMQIEQRILIVGTPSERVTRLCCIFEFLGEQCEIVSNESFLALIEQSRYRAVVIVDENIS
VESIKNIAAIVPWQPMLLLGDTDINLSNMLGTIEEPINYPQLTELLHFCQVFGQAKREHT
LTSGNQTKLFRSLVGRSEGIAKVRHLINQVSSSDATVLVLGQSGTGKEVVARNIHYLSER
RDGPFIPVNCGAIPAELLESELFGHEKGSFTGAISSRKGRFELAEGGTLFLDEIGDMPLQ
MQVKLLRVLQEKVFERVGGSKTIATDVRIVAATHRDLETMIVDNSFREDLYYRLNVFPIE
MPGLSERRDDVPLLLHELVSRVFNEGRGKVRFTQRAIESLKEHPWSGNVRELSNLVERLT
ILFPGGLVDVNDLPHKYRYIEVPEYCVEISEEQLERDALASIFSDEEPVEIPETRFPSEL
PPEGVNLKDLLAELEIDMIRQALEQQDSVVARAAEMLGIRRTTLVEKMRKYGLSKD
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaaatagaacaaagaattttaattgtcggtaccccatcagagcgcgtgactcgt
ttgtgctgcattttcgaattcctaggcgagcagtgtgaaattgtctctaatgaatctttt
ttagccctgatcgagcaatctcggtatcgcgctgttgtcattgttgatgaaaacatcagc
gtcgagagtattaaaaacatagccgctatagtgccttggcaaccgatgttgttattaggc
gataccgatatcaatttatccaacatgctcggaacaattgaagagccgataaattacccg
caattgactgaactgctgcatttttgccaagtttttggccaagccaagcgagaacacact
ttaaccagtggcaaccaaaccaaactattccgaagcttagtcgggcgcagtgaaggtatt
gctaaagtccgccatttgattaaccaagtatcaagctctgatgcgacagtattagtactg
ggtcaatcggggaccggtaaagaggttgtagcgcgtaatattcattatttatctgaacga
cgagatggaccgtttatcccggtcaattgtggtgcgattcctgctgaattacttgaaagt
gaattgtttggccatgaaaaaggctctttcactggggctatatcatctcgtaaaggccgt
tttgaattggctgaaggtggcacgctctttttagatgaaattggtgatatgccgctgcaa
atgcaagttaagttgttacgtgtgttgcaagaaaaggtatttgaacgtgttggtggcagt
aaaacaattgctaccgatgtgcgtatcgttgccgcaacgcatcgcgatcttgaaaccatg
attgtagataactcatttcgagaagatttatattatcgactcaatgtgttcccaattgag
atgccaggattaagtgagcgtcgtgacgatgtgccgctactattgcatgaattagttagc
cgagtatttaatgaaggccgcggtaaggttcgtttcactcaacgcgccatcgaatcgtta
aaagaacacccttggtctggtaatgtgcgagagttatcaaacttggtcgagcgtttaacg
atcttattccctggtggattagtcgacgttaatgatttaccgcataagtaccgttatata
gaggtaccagaatattgcgttgaaatcagtgaagaacaattagagcgcgatgctttagct
tcaatattcagtgatgaagagcctgttgaaatacctgaaacgcgtttccctagtgaattg
ccgccagaaggggttaatttaaaagatttactagcggaattagaaattgacatgatccgt
caagcgcttgagcagcaagatagtgttgtagcaagagctgctgaaatgttgggtattcgt
cgtacaacattagtcgaaaaaatgcgtaaatatggtttgagtaaagactag
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