Shewanella frigidimarina: Sfri_1180
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Entry
Sfri_1180 CDS
T00395
Name
(GenBank) two component, sigma54 specific, transcriptional regulator, Fis family
KO
K10943
two-component system, response regulator FlrC
Organism
sfr
Shewanella frigidimarina
Pathway
sfr02020
Two-component system
sfr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Sfri_1180
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Sfri_1180
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
sfr02022
]
Sfri_1180
02035 Bacterial motility proteins [BR:
sfr02035
]
Sfri_1180
Two-component system [BR:
sfr02022
]
Other families
FlrB-FlrC (polar flagellar synthesis)
Sfri_1180
Bacterial motility proteins [BR:
sfr02035
]
Flagellar system
Flagellar assembly proteins
Others
Sfri_1180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
HTH_8
AAA_5
AAA_2
HTH_30
Mg_chelatase
AAA
AAA_16
AAA_19
AAA_14
MerR
AAA_3
AAA_22
HTH_24
AAA_7
NPHP3_N
AAA_18
MCM
HTH_50
nSTAND3
HTH_11
DUF2089
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
ABI71033
UniProt:
Q085N2
LinkDB
All DBs
Position
1389924..1391273
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AA seq
449 aa
AA seq
DB search
MAEANILLVEDDADLREALLDTLMLAHYDCVDVGSAEEAILALKANHFDMVISDVQMDGI
GGIGLLGYLQQHQPKLPVLLMTAYATINSAVNAMKLGAVDYLAKPFAPEVLLNQVSRYLP
LKQNHDKPVVADEKSLALLSLAQRVAVSDASVMIMGPSGSGKEVLARYIHQHSQRHDQPF
IAINCAAIPENMLEATLFGYEKGAFTGAYQACPGKFEQAQGGTILLDEISEMELGLQAKL
LRVLQEREVERLGGRKTIKLDVRVLATSNRDLKAMATSGEFREDLYYRINVFPLTWPALH
QRPADILPLARHLLIKHAKAFNMASVPKLDDAATRRLLTHRWPGNVRELDNVIQRALILR
VNDDIGVNDIILDCADVSLVATECVDADKPAEVDGLGDELKAQEHVIILETLNQCQGSRK
MVAEKLGISARTLRYKMAKMRDMGIQLPA
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
gtggctgaagcaaatattttattagttgaagatgatgccgatttacgcgaggcattgctt
gatactctcatgcttgcccattatgactgtgtcgatgtaggtagcgctgaagaggccatt
ctggccttgaaagcaaaccattttgatatggtgattagcgatgtgcagatggacggtatt
ggtggtatcgggttgttgggttatttacaacagcatcaacctaaactgccagtattgtta
atgaccgcttatgccactattaacagtgctgtgaatgcgatgaaattaggtgcagtggat
tatttggctaaaccgtttgcgcctgaagtgttattgaatcaggtgtcacgttatttacct
ttaaaacaaaatcatgataaacccgtggtcgcagatgagaaaagtttagcgctgttgtcg
ctggctcagcgggtagcagtatctgatgcatcggtaatgattatgggtcctagtggctca
ggtaaagaagtgttagcgcgctatattcaccaacatagtcaacgccatgaccaaccattt
attgcgattaactgcgctgcaatcccagaaaacatgttagaagccactttatttggttac
gagaaaggtgcatttactggcgcttatcaagcctgcccaggtaagtttgaacaagcccaa
ggcggcactatattacttgatgaaatatctgagatggaacttggcttacaagctaaattg
ctcagggtattacaagagcgcgaagtagagcgtttaggtggccgcaaaaccattaaactt
gatgtgcgagtgttggcaacctcaaacagagatttaaaagccatggcgacctctggtgag
tttagggaagatttatactaccgaattaatgtgtttccgttaacgtggccagcgctgcat
cagcgtcctgctgatatattaccgcttgcacggcatttgctgattaaacatgctaaagca
tttaatatggcttctgtgcctaagcttgatgatgctgccactcggcgtttattgactcat
cgatggcctggtaacgtgcgcgagttagataatgttattcaacgagcgctaatattacgg
gttaatgatgatattggtgtcaatgacattattttagattgtgccgatgtgagtttagtt
gcaactgaatgtgttgatgcggataagccagccgaagttgacggtttaggtgacgaacta
aaagcccaagaacatgtcattattttagaaactctaaatcaatgtcagggcagtcggaaa
atggtcgctgaaaaactcggtataagcgcccgtacgctacgttataaaatggccaaaatg
cgtgatatgggtattcaattacctgcttaa
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