Shewanella frigidimarina: Sfri_1199
Help
Entry
Sfri_1199 CDS
T00395
Name
(GenBank) RNA polymerase, sigma 28 subunit
KO
K02405
RNA polymerase sigma factor FliA
Organism
sfr
Shewanella frigidimarina
Pathway
sfr02020
Two-component system
sfr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Sfri_1199
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Sfri_1199
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfr03021
]
Sfri_1199
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
sfr02035
]
Sfri_1199
Transcription machinery [BR:
sfr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Sfri_1199
Bacterial motility proteins [BR:
sfr02035
]
Flagellar system
Flagellar assembly proteins
Stator
Sfri_1199
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
HTH_10
UPF0122
HTH_23
GerE
PhyR_sigma-like
Motif
Other DBs
NCBI-ProteinID:
ABI71052
UniProt:
Q085L3
LinkDB
All DBs
Position
1409704..1410423
Genome browser
AA seq
239 aa
AA seq
DB search
MNKAAAYTQFDNKTSIVEQYAPLVKRIAHHMLARLPASVQLDDLLQAGMMGLLEASSKFD
NSKGAKFETFAGIRIRGAMIDEIRRGDWVPRSVHRNNRLVAHAIDELGQLLGRDANDTEI
AEKLDMSLDEYHHILNDVSVGKIIGIEDLGVSQDVLITDNESPDETFDSLAEIQFQSALV
EAIKTLPERDALVLSLYYDEALNLKEIGAILEVSESRVSQILSQAMLRLKAKLKHWTQE
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
gtgaataaagccgcagcgtatactcagttcgataacaaaacgtctattgttgaacagtat
gcaccgttggtaaaaagaattgctcatcatatgctggcaagattaccagcatcggtgcaa
cttgatgatttattacaagcagggatgatggggttacttgaggcctcttctaaatttgat
aatagtaaaggggctaagtttgaaacctttgctggcatcagaattcgtggtgcaatgatt
gatgaaattcgccgtggtgactgggttccgcgctcagttcatcgtaataatcgtctagta
gcacatgcaattgatgaattggggcaactgcttggaagagatgccaacgatacagaaatt
gctgaaaaacttgatatgtcgctcgatgagtaccatcatatcttaaatgatgtttctgtt
ggtaaaatcataggcatagaagatcttggtgtttcgcaagatgtgttaatcacagataac
gaatcaccagatgaaacctttgactcgcttgctgaaattcaattccaatctgcattggtt
gaagcaattaagacattgccagaaagagatgcattagtgttgtcgttatattacgacgaa
gcattaaatttaaaagaaatcggtgccatccttgaagttagcgaatcgcgagtaagccag
atattaagtcaggcaatgctcagattaaaagcgaagctcaagcattggacacaagaataa
DBGET
integrated database retrieval system
