Shewanella frigidimarina: Sfri_1395
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Entry
Sfri_1395 CDS
T00395
Name
(GenBank) tRNA pseudouridine synthase A
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
sfr
Shewanella frigidimarina
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sfr03016
]
Sfri_1395
Enzymes [BR:
sfr01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
Sfri_1395
Transfer RNA biogenesis [BR:
sfr03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Sfri_1395
Prokaryotic type
Sfri_1395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
DUF2344
Motif
Other DBs
NCBI-ProteinID:
ABI71247
UniProt:
Q084R8
LinkDB
All DBs
Position
1666350..1667135
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AA seq
261 aa
AA seq
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MRVALGIEYDGSSFCGWQRQLEVDSVQAQIEKALSYVANEPITVSCAGRTDTGVHGTGQV
VHFDTDVQRPMTAWTQGVNANLPDSVAIRWAKEVDDSFHARYSATARRYRYVIYNHKLRP
GILSAGVSHYHGDIDETLMHKAAQLFVGEHDFTSFRALHCQSKTPFRNVHQVNVTRQGMY
VMVDIQANAFLHHMVRNIVGSLLQIGLGNQPIEWITELFALKNRKLAAPTAKPNGLYLVD
VTYPEHYQLPKLALGPLFMLD
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atgcgggtcgcgttaggtattgaatatgatggtagtagtttttgtgggtggcagcgccaa
ctcgaggtcgattcagtgcaagcccagattgagaaagcgttaagttatgtggctaatgaa
cctataaccgtatcgtgtgccggaagaacagatactggtgtgcacggtaccgggcaggtg
gttcattttgacacagatgttcaacgtccaatgacggcgtggacacagggcgttaatgct
aatttaccagacagtgtggctatacgctgggcaaaagaagtcgatgacagttttcatgct
cgttacagtgctacagccagacgttatcgctatgtgatttataatcataaactgcgccct
ggtattttaagtgcaggtgtaagccattatcacggtgatattgatgaaactttgatgcat
aaagcggcacagctttttgttggcgaacacgattttaccagttttagagccttgcattgt
caatctaaaacaccgtttcgaaacgtgcatcaagtcaatgtaactcgccaaggtatgtat
gtgatggtcgatattcaagctaatgcatttttacatcatatggtgcgcaatattgttggt
tcattactgcaaatcggcttaggtaatcaacctatagagtggataacagaattgtttgcc
ctgaaaaatcgtaagctagcggcacctaccgctaaaccgaacggattgtatttggtcgac
gtaacttatcctgaacattatcaattacctaagctagctttgggtccattgtttatgctc
gattaa
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