Shewanella frigidimarina: Sfri_1420
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Entry
Sfri_1420 CDS
T00395
Name
(GenBank) Exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
sfr
Shewanella frigidimarina
Pathway
sfr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Sfri_1420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfr03400
]
Sfri_1420
Enzymes [BR:
sfr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
Sfri_1420
DNA repair and recombination proteins [BR:
sfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
Sfri_1420
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
FTSW_RODA_SPOVE
Motif
Other DBs
NCBI-ProteinID:
ABI71272
UniProt:
Q084P3
LinkDB
All DBs
Position
complement(1695133..1695939)
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AA seq
268 aa
AA seq
DB search
MKIVSFNINGIRARLHQLQALIDSHSPDIIGLQETKVHDEAFPVADVEAMGYKVHYHGGK
AHYGVAMLSKAEPVNVIKGFETDDEDAQRRLIIGQFKQDNGRILTVFNGYFPQGESIHHE
TKYPAKRKFYQDLMVHLEKHHSADEDIAIIGDINISPTDLDIGIGEVNAKRWLKTGKCSF
QPEEREWLARLQQWGFIDSFRQLHPTRTERYSWFDYRSKGFDDNRGLRIDVILVTESMLP
RLVESDVDYELRGIDKPSDHAPIWSTFS
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatagtttcttttaatatcaatggtattcgtgctcgtttgcatcaactgcaagct
ctcattgacagtcattcacccgatataattggcttacaagaaaccaaagtgcatgacgaa
gctttcccagtagctgatgttgaggctatgggttacaaggtccattatcatggtggcaaa
gcacattatggcgtggcgatgttgtcaaaagcagaacctgtcaatgttattaaaggtttt
gaaaccgatgatgaagacgcgcaacgccgcctgattattggtcaattcaagcaagataat
ggccgcatattaaccgttttcaatggttactttccacaaggtgaaagcatccatcacgaa
acaaagtaccctgcgaaacgtaagttttatcaagacttaatggtgcatttagaaaagcat
catagcgcagatgaagacatcgcgattattggtgacattaatatttcgccaacagattta
gacatcggtattggtgaggttaacgccaaacgttggttaaaaaccggtaaatgtagtttc
caaccagaagaacgtgaatggttagcacgtttacagcaatggggctttatcgatagtttc
cgtcaattacaccctactcgcactgaacgttattcatggtttgattatcgtagtaaaggt
tttgatgataaccgtggacttcgaattgacgtcattctggtcacagagtcaatgttgcca
cgtttagttgagtcagatgtagattacgaattacgcggtattgataaaccatcagaccac
gcgccaatttggagcacatttagttaa
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