Shewanella frigidimarina: Sfri_1467
Help
Entry
Sfri_1467 CDS
T00395
Name
(GenBank) type III restriction enzyme, res subunit
KO
K19789
DNA repair protein RadD
Organism
sfr
Shewanella frigidimarina
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfr03400
]
Sfri_1467
DNA repair and recombination proteins [BR:
sfr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
Sfri_1467
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
Helicase_C
DEAD
SWI2_SNF2
DUF7577
AAA_16
AAA_30
SLFN-g3_helicase
AAA_22
zf-tcix
AAA
DUF3638
DZR
SNF2-rel_dom
T1R_D3-like
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ABI71319
UniProt:
Q084J6
LinkDB
All DBs
Position
complement(1752289..1754040)
Genome browser
AA seq
583 aa
AA seq
DB search
MKHSSTHPVNITLRDYQQQSVDAAIAHFKHSQQSAVLVLPTGAGKSIVIAELARIANGNV
LVLTHVKELVAQNAEKVGLLTQEANIYSAGLNQKKANGKTVVASVQSAARALDKFTQAFS
LVIIDECHRVSNESTSQYQQLLTHLKARNPDIKLLGLTATPYRLGLGWIYRHHYHGKVGN
TDTPVFEKCIFELPMRPLIKKGYLTKPTIFDGLSAQYDFSELVAHDSGEYPQMEIDSLLH
HQGRATTAIIKQVKQLAELRKGVLIFAATVRHANEVMTLLDDDAALITAQTPHSERDDII
NRFKAQRLKYIVNVAVLTTGFDAPHVDLIAILRPTASVSLFQQMIGRGLRLAPNKADCLV
IDYAANGYDLFYPEVGQAKPNSKSVPVQVHCPVCQFANTFWGLVDGDGDIIEHYGRRCQG
LIDELQQCDFRFRSKSCPDCGAENDIAARICHSCQSTLIDPDKRLKQVLNAQHHHLFKCE
QMLLRDQDNKLLIQYIDIEGNDFKRMFSFATPAQRKAFYAVFVLSHTRTPGIPHPQYNKV
TDVLTDQIRFRKPDLLLLKKNKHRWDLVDSFFDYQGKYKIDMS
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacactcatctactcaccccgtaaatatcaccttacgtgactatcaacaacaatcg
gtcgacgcggctatagctcacttcaagcacagccaacaatcggcggtattagtgctacct
accggtgcgggtaaaagtattgtgattgccgaactggcacgtatcgcgaatggtaatgtg
ctagtgctcacccatgtaaaagaattagtcgctcaaaatgctgaaaaagtgggtttactc
actcaagaggccaacatctattccgcaggattaaatcaaaaaaaggctaatggcaaaacc
gtggtagccagtgtccaatcagccgctcgcgccctagataaattcactcaagcattttca
ttagtgatcattgatgaatgccatcgagtcagtaatgagtctactagccaatatcaacaa
ctgctcacgcaccttaaagcgcgtaatcctgacattaaactgcttgggctaactgccacg
ccttatcgtttaggtttaggctggatttaccggcaccattatcatggaaaagtaggtaat
acagatacacctgtattcgaaaaatgcatttttgaacttccaatgcgaccattgatcaaa
aaaggttacttaaccaaaccaaccatttttgacggactgagtgcacagtatgattttagt
gagctcgttgcacatgacagtggtgaatatccacaaatggaaatcgattctttattacat
catcaaggacgagcaaccacagctattatcaaacaagtaaaacaacttgctgaactccga
aaaggtgtattgatttttgctgctacggtcagacatgccaatgaagtaatgactctatta
gacgacgatgccgccttaattaccgctcaaacgccacatagcgaacgtgatgacatcatc
aatcgctttaaagcccaacgtctcaaatacattgttaacgttgccgtattaaccacaggc
ttcgatgctcctcacgtcgaccttatcgcaattttgcgccccaccgcatcggtgagccta
ttccaacagatgataggtcgaggattacgcttggcccccaataaagcagattgtttagtc
attgattatgccgctaatggttatgacttattttacccggaagtcggtcaagccaaaccc
aatagcaaatcagtaccagtacaagtgcattgtcctgtatgtcaatttgctaatactttt
tggggcctagtagatggcgatggcgatattattgaacattatggcagacgctgtcagggg
ttaatcgatgagctgcaacagtgtgactttagatttagatcaaagtcatgccctgactgt
ggagcggaaaatgatatcgcggcacgtatttgtcatagctgccaatcaaccttaattgat
cccgataagcgactaaaacaagtacttaacgctcagcatcatcacttatttaaatgtgag
caaatgttgttgcgcgatcaagacaataagttgcttattcaatatattgatattgaaggt
aatgattttaagcgaatgtttagcttcgccacaccagcacaacgaaaagcattttatgcg
gtatttgttctcagtcatacccgcactccaggtataccgcatcctcaatataataaagta
accgatgtattgacggatcaaattcgattcagaaaacccgatttattattactgaaaaaa
aacaaacatcgctgggatttagttgattcattttttgactatcaaggcaaatataaaatc
gatatgagttaa
DBGET
integrated database retrieval system
