Shewanella frigidimarina: Sfri_1490
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Entry
Sfri_1490 CDS
T00395
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sfr
Shewanella frigidimarina
Pathway
sfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sfri_1490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfr03019
]
Sfri_1490
03009 Ribosome biogenesis [BR:
sfr03009
]
Sfri_1490
Enzymes [BR:
sfr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Sfri_1490
Messenger RNA biogenesis [BR:
sfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Sfri_1490
Ribosome biogenesis [BR:
sfr03009
]
Prokaryotic type
rRNA processing factors
Sfri_1490
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ABI71341
UniProt:
Q084H4
LinkDB
All DBs
Position
complement(1778819..1782193)
Genome browser
AA seq
1124 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQELYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDY
GADRHGFLPLKEIGREYFPKGYSFQGRPNIKEVLQEGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAMAELEVPNGMGLIVRTAGVGKESTEL
KWDLKVLQHHWDAIQEAAQSKAAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEA
KLHIGLVRPDFVERVKLYDSEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRSTESLAL
SILRLMEEEAIKENTTQIEAIVPVDVAAFLLNEKRKAIRITEERHQVEVYIIPDAHMQTP
DYRVVRRKSDDEVSESSYKRVEQPVAKLYEPRKLERAASPEPALKGFAAPQKAAEDTVKA
TPVNVAPVATSNQPSLFTRMISAISALFSGSEAEVKETKAAVSTKESTQTNTRRNTRRND
TRNDSANRNDKRNDSRRQRNDSDKSKDGTEARSQNKRNERNSRNTVQDDNAKNKPKTEKV
DKPLAVNETKATDAKVAEVKVATEKSPKQEAARERRQRRNLRRKVRIENEQSEALPTTDV
NDNKSTEQSVEVMTSEPKAVESKVAEDKTSETRAPRSRRQPRKEKTEQAVEAPAENETEQ
ATDPVTEVANVTSTAAPVETDATAVVEVKAETTQADVDTVTETVVASTDVAAETDESSSS
AEDATTDSEAEGREGQRRSRRSPRHLRAAGQRRRRDDETGSTQPAVFTPNDELEKQLDAE
QARTQAQAPVTEAIVESVTKPAETVSTAAETATKPVEVLKAEVNKANAAPVNVEKTETPV
EIKEVPQAVKAPEAPEPKAEVEVVKTTVDVEAKQTTVANTAVVEAEKAAALTSKQDKTVA
ANSSAPMAKPAAIVRQAKPEVVKEVAATIAETVSTEAAPSTKVPVKASRFGSMVSSDTTK
PTVDVREQKAVPQGRTYEAQATDSKVTKVAKNNSASADMTRPGE
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttaattaatgcaactcaatcagaagagttgcgcgtagccctagtagat
gggcaagaactgtatgatttagacattgaaagtcctggtcacgaacagaaaaaatcaaat
atctataaaggtaaaatcactcgagtagaaccgtcacttgaagctgcatttgttgattac
ggtgcagatcgtcacggttttttacctctcaaagaaattggtcgcgaatacttcccaaaa
ggttattcattccaaggccgtccaaacattaaagaagtgttacaagaaggccaagaggtc
atcgttcagatagataaagaagaacgaggcaacaaaggcgctgcactaactacttttatt
agtcttgctggatcttatttagtcttaatgccaaataaccctcgtgctggcggtatttct
cgtcgtatcgaaggtgatgaacgtacagaactaaaagaagcaatggctgagttagaagta
cctaatggtatgggcttgattgtgcgtactgctggtgttggtaaagaatcaacagagcta
aagtgggacttaaaagtactacaacatcattgggatgctattcaagaagctgctcaaagt
aaagctgcaccattcttaatccaccaagaaagtaacgtgattgttcgcgctattcgtgac
tatttacgtcgtgatgtaggcgaaatccttatcgatcacccacgtattttcgaagaagct
aaattgcatattggtttagtgcgtcctgattttgttgaacgtgtaaagctatatgactca
gaagtaccactgtttactcacttccaaatagagtctcaaattgagtcagcgttccaacgc
gaagtgcgtttaccttcaggtggatcaattgtaattgacccaacagaagcattaacgtct
atcgatatcaactcagcccgtgcaactaaaggcggcgacattgaagaaactgcactaaac
actaaccttgaagctgctgatgaaattgctcgtcaattacgtcttcgtgatttaggtggt
ttagtggttatcgactttatcgatatgacacctgttcgtcatcagcgtgaagttgaaaat
cgtttacgtgatgcagtacatcatgaccgtgctcgtgtgcaattaggtcgtatttctcga
tttggtttgatggaaatgtcgcgtcagcgtctacgtccatcgctagaagagtctgccgct
catttgtgccctcgttgtcatggtcaaggcactattcgtagtaccgaatctttagcatta
tcgattttacgattaatggaagaagaagccattaaagaaaacaccacacaaatcgaagcg
attgtgcctgttgatgttgctgcgttcttactaaacgaaaaacgtaaagcgattcgtatt
acagaagagcgtcaccaagttgaagtgtacatcattccagatgcacacatgcaaacacca
gattaccgtgtagtgcgtcgtaagagtgatgatgaagtcagtgaatctagctataagcga
gtagaacagcctgtcgcaaaattgtatgagcctcgcaagcttgagcgtgcagcatctcct
gaacctgcattaaaaggcttcgcagcgccacaaaaagcagctgaagatacagtaaaagcc
acaccagtaaatgtcgctcctgtggcaacgtctaatcagccaagtttattcactcgaatg
atctctgccattagcgctttattttctggaagtgaagctgaggttaaagagaccaaagca
gcagtatctactaaagaatcgactcaaactaacactcgtcgtaacacccgtcgtaatgac
actcgtaacgacagcgctaaccgtaatgacaaacgcaatgacagtcgccgtcaacgtaat
gacagcgacaaatcgaaagacggcacagaagctcgttctcagaataagcgtaatgaacgt
aatagcagaaatacagttcaagatgacaacgccaaaaacaaaccgaaaactgagaaagtt
gacaagccattagctgtcaatgaaaccaaagcaacagatgctaaagttgccgaagttaaa
gtcgctacagaaaaatctccaaaacaagaagctgctcgtgagcgtcgccaacgtcgtaat
ttacgtcgtaaagtgcgtattgaaaacgaacagagtgaagcattaccaacaaccgatgtt
aatgataataaatcaactgagcaatcagttgaggtaatgacatcagaacctaaagcggta
gagtcaaaagtagctgaagataaaacatcagaaacgagagcgccacgcagtcgtcgtcaa
cctcgtaaagagaagactgaacaggcggttgaagcgccagctgaaaatgaaacagagcaa
gcaactgatccagttactgaagtagcaaatgttaccagtactgctgctccagttgaaact
gacgctactgccgtggttgaagtaaaagcagaaacaactcaagcagatgttgatactgtc
actgaaacggtagttgctagcactgacgttgcagctgaaactgatgagtcaagctcgagc
gctgaagatgctacaacagacagcgaagctgaaggccgtgaaggtcaacgtcgtagtcgt
cgtagtcctcgtcacttacgtgcagcaggtcaacgtcgtcgtcgtgatgatgaaacaggc
tctacacaaccagctgttttcacacctaatgatgagttagagaagcaattagacgcagag
caagctagaactcaagcacaagctcctgtaactgaggctattgttgaatccgttactaaa
cctgctgaaacggttagcactgctgctgaaaccgctactaagccggttgaagtgcttaaa
gctgaagttaacaaagctaatgcagcacccgttaatgttgaaaaaactgaaacgccagta
gaaataaaggaagtacctcaagcagtaaaagcacctgaggcccctgaacctaaagctgaa
gtagaagttgttaaaacaacggttgatgttgaagctaaacaaaccactgtggcaaatacc
gcagttgttgaagctgaaaaagctgcagcgttaactagcaagcaagataaaacggttgcg
gccaattcatctgcgcctatggctaagcctgctgcaattgtgcgtcaagctaaacctgaa
gtcgtaaaagaagtcgcggcgacaatagcagagacggtttctactgaagcagcgccatca
accaaagtccccgtaaaggcaagtcgctttggttctatggtgtcatctgacacgactaaa
cctacagtagatgtccgtgagcagaaagcggtacctcaaggacgtacttacgaagctcaa
gcgactgacagcaaggttacgaaagtagcgaagaataacagtgcatctgctgatatgact
cgccctggagagtaa
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