Shewanella frigidimarina: Sfri_1638
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Entry
Sfri_1638 CDS
T00395
Name
(GenBank) Exodeoxyribonuclease I subunit C
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
sfr
Shewanella frigidimarina
Pathway
sfr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
Sfri_1638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfr03400
]
Sfri_1638
Enzymes [BR:
sfr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
Sfri_1638
DNA repair and recombination proteins [BR:
sfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
Sfri_1638
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Sfri_1638
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Sfri_1638
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
EF-hand_14
Motif
Other DBs
NCBI-ProteinID:
ABI71489
UniProt:
Q083S6
LinkDB
All DBs
Position
complement(1950662..1952083)
Genome browser
AA seq
473 aa
AA seq
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MKINHEETPSLYWHDYETFGANPSKDRPSQFAGIRTDLELNIIGEPETFYCKLAPDYLPS
PEAILITGITPQLANLKGVPEAEFMKRINTLFSQPNTCVVGYNSLRFDDEVSRYGFYRNF
IDPYGREWQNGNSRWDIIDLVRACYAFRPDGINWPKKEDGSPSFKLELLTQANGLSHEKA
HDAMSDVYATIAMAKLIKQTHPKLYEYYFNLRRKQAVADHIDVLKMQPLVHVSSKISALQ
GCTTLIAPVAYHPTNKNAVICINLAMDISPLLELSAQEINDRMYTSRQNLAENELAIPLK
QIHLNKCPFIGSPKLLDDEVAEKLQFDKAFAREQYKRLKNHPELREKLNQVFELESDRKA
ITDPDLMLYSGGFFSHADKTKIDIICHTAPHNLAALALQFDDPRINEMLFRFRARNYPET
LSDSEARKWRDFCQQRLSDADYVIKLENLVEETSENEHKQKLLKALYQYLQSL
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaaaataaatcatgaagaaaccccatcactttactggcacgattatgaaacattcggg
gcaaacccaagcaaagatcgtccgtctcagtttgcgggtattcgaaccgatctagaactc
aacattatcggcgaacctgaaaccttttattgcaaactcgcgcctgactatttaccgtct
cctgaagccatattaattacggggataactccacaactggccaaccttaagggtgtacca
gaagctgagttcatgaaacgtattaatacgctgtttagccaacccaacacctgcgttgtg
ggctataactcattacgttttgatgatgaggtcagtcgttatggtttctatcgtaatttt
atcgacccttatgggcgagaatggcaaaacggtaattctcgttgggatatcattgacttg
gttcgggcttgctatgcatttcgcccagacggaattaattggccaaagaaagaagatggc
tcaccgagttttaagcttgagttgcttacccaggcgaatggcttaagtcatgaaaaagcg
catgatgccatgtcagatgtttatgccactatagcaatggctaaattgataaagcagaca
cacccaaagttgtacgaatactattttaatttaagacgtaaacaagcagttgcagaccat
attgatgtcctaaagatgcaacctttggttcatgtcagttcaaagattagtgcgttacaa
ggctgtactacattaattgcgcctgttgcgtatcacccaactaataaaaatgcggtgata
tgcattaatttggccatggacatctcaccattattagaactatcagctcaagaaatcaac
gaccgcatgtatacatcgcgtcaaaatttagctgaaaacgagctcgcgataccactcaaa
cagatccacctcaacaagtgtccttttatcggttcgccaaaattacttgacgacgaggta
gctgaaaaattacagtttgataaagcattcgcacgtgagcaatataaacgcttaaaaaac
catccagaattgcgcgaaaagcttaaccaagtatttgaacttgaatcagatcgtaaagcg
ataaccgatcctgatttaatgctatatagcggtggatttttcagccatgctgataaaacc
aaaatagacattatttgccataccgcaccacataatttagcggcattagcattgcagttt
gatgatccacggatcaatgaaatgttatttcgttttcgggcacgtaattatccagaaaca
ttaagcgacagtgaagcccgtaaatggcgagatttctgtcaacaacgcttatcggatgcc
gattatgtgattaaactcgaaaacctggttgaagaaaccagcgagaatgaacacaaacaa
aagctattaaaagccctatatcaatatttacagtcgttatag
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