Shewanella frigidimarina: Sfri_1733
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Entry
Sfri_1733 CDS
T00395
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
sfr
Shewanella frigidimarina
Pathway
sfr00061
Fatty acid biosynthesis
sfr00071
Fatty acid degradation
sfr01100
Metabolic pathways
sfr01212
Fatty acid metabolism
sfr02024
Quorum sensing
sfr04146
Peroxisome
Module
sfr_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Sfri_1733
00071 Fatty acid degradation
Sfri_1733
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Sfri_1733
09145 Cellular community - prokaryotes
02024 Quorum sensing
Sfri_1733
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
sfr01004
]
Sfri_1733
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sfr04147
]
Sfri_1733
Enzymes [BR:
sfr01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Sfri_1733
Lipid biosynthesis proteins [BR:
sfr01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Sfri_1733
Exosome [BR:
sfr04147
]
Exosomal proteins
Exosomal proteins of breast milk
Sfri_1733
Exosomal proteins of breast cancer cells
Sfri_1733
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-ProteinID:
ABI71583
UniProt:
Q083I2
LinkDB
All DBs
Position
2040345..2042018
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AA seq
557 aa
AA seq
DB search
MDQPWINNLPEHVPAEIDPSQFSSLVHMFEDAVAKYADQPAFINMGATMTYRKLEERSRA
FAAYLQNELHLNKGDRVAIMMPNLLQYPIALFGILRAGMVVVNVNPLYTPRELKHQLVDS
GARAIIVVSNFANTLEEIVDQTPIESVIITNLGDQLSAPKRTLVNFVVKYIKRLVPKYHL
PHALSFRDALSKGRRLQYIKADISGEDLAFLQYTGGTTGVSKGAMLSHKNVVSNVLQASG
AYSPALDDGAEFVVTALPLYHIFALTVNCLLFIHKGSKNLLITNPRDIPAFVGELRKYPF
TVLTGVNTLFNALVNNEEFTQLDFSGLKLSIGGGMAVQRAVADKWQNLTKTRLLEGYGLT
EASPLVTCCPYNLSGYNGSIGFPAPSTFIQIRDDDGKVLAQGETGELFAKGPQVMQGYWQ
RPEETASVIDKNGWLATGDIGYMDEKGFFFIVDRKKDMILVSGFNVFPNEVEEVVALHPK
VIEVAAVGVPNDASGELVKIFVVAKDKSLTEEELIKHCRHHLTGYKVPKLVEFRDELPKT
NVGKILRRQLRDEVKKA
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
gtggaccagccttggattaataatttacctgaacatgttccggccgaaatcgacccatct
caattcagttctttagtacacatgttcgaagatgcagtagcaaaatatgctgaccaacct
gcatttattaacatgggtgcgacgatgacgtaccgtaaactcgaagagcgaagccgagca
tttgctgcatatttacaaaacgaactgcacttaaataaaggcgaccgtgttgccattatg
atgcctaatttgctgcaatatcctattgctctgtttggtattttacgtgcgggaatggta
gtggttaacgttaacccactgtatacgccacgggaattaaaacatcaattagtagattcg
ggtgcaagagccatcattgtggtgtctaactttgctaataccctagaagaaattgttgat
caaactccaatagaatcagtcattattactaatcttggtgatcaactcagtgcacctaaa
cgcactttagttaattttgttgttaaatacattaaaagattagtgccaaaatatcattta
cctcatgcattatcatttcgcgatgcactctctaaaggccgacgcctacagtacattaaa
gccgatattagtggcgaggatttggcttttttacagtataccggtggaacgacaggggta
tctaaaggtgccatgttaagccataaaaacgtagtaagtaacgttttacaagctagtggt
gcttattcgccagcgcttgatgatggtgctgagtttgtggtgacagcattgcctctgtac
catatttttgccctaacagtgaattgtttattgtttatacataaaggtagcaaaaattta
ctgatcactaaccctcgcgatatcccagcatttgtgggtgaattgagaaagtacccgttt
acggtattaacgggtgttaataccttattcaatgctttagtgaataacgaagaatttact
caacttgatttttctggtttaaagttgtctattggcggcgggatggcggtgcagcgcgcc
gtagctgataaatggcaaaacctaactaagacacgcctactcgaaggttatggtttaact
gaagcctcaccattggtcacatgctgcccatataacctcagtggttacaatggttcaatt
ggctttcctgcgccttcaacgttcattcaaatacgtgatgatgatggcaaagttctagcc
cagggcgaaactggtgaattatttgctaaaggcccacaagtgatgcaaggttattggcag
cgtccggaagaaacggcgagtgtcattgacaaaaacggttggttagctacaggtgatatt
ggttatatggatgaaaaaggtttctttttcattgtcgatcgtaagaaagatatgatttta
gtgtcaggttttaatgtattcccgaatgaagtggaagaggttgttgcattacatcctaaa
gttatcgaagtcgctgcggttggcgttcctaacgatgccagtggcgaattagtgaagatt
tttgtggtagcaaaagacaaatcattaaccgaagaagagctgattaagcactgtcgtcat
catttaacgggatataaagttcctaagctggtagaatttagagacgaattaccgaaaacc
aatgtgggtaaaattttacgccgacaacttcgagatgaagttaagaaagcgtaa
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