Shewanella frigidimarina: Sfri_1734
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Entry
Sfri_1734 CDS
T00395
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sfr
Shewanella frigidimarina
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sfr03016
]
Sfri_1734
Enzymes [BR:
sfr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Sfri_1734
Transfer RNA biogenesis [BR:
sfr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Sfri_1734
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
DUF1617
Motif
Other DBs
NCBI-ProteinID:
ABI71584
UniProt:
Q083I1
LinkDB
All DBs
Position
2042108..2043220
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AA seq
370 aa
AA seq
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MLTFEYISDDASLLSLVEQYQQSTLLVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVA
ITDLSPFWQLLTDQNIVKLVHSCSEDLEVFAHYGECQPSPLFDSQIAASFAGLGHGLGYA
KLVDACLQVEIDKGESRTDWMNRPLSDAQLQYAANDVFYLYQLYPQLQQKLAADNRVEWL
FEEGQRMTEGRMSLPAGDSVYLKVKNAFQLSSQQLAYLKVLAKWRLAKAVSRNLALGFVV
KDHALIALAKKQPTTLAELNSLNDLTDQEKRIHGKDLLTVMATADLINLPEEVDVVALKS
GYKSAFKEVKTVLTELCERENVALEFVGSKRHIHEFLLWLYHNKQTPTPILLVGWRGQLV
GDLLEPVRFS
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
ttgttaacgtttgaatatatcagtgatgatgccagcctgttgtcattagttgaacaatac
caacaaagcaccttactggtgctagatactgagtttgtccgcactcgaacctattatgct
aaattaggccttattcaagcctatgatggcaaaactttagccttaattgatccggttgcg
attaccgatttaagcccattttggcagttattaactgaccaaaatattgtcaaattagtg
cattcatgcagtgaagatctcgaagtatttgctcattacggtgaatgccagccaagccca
ctatttgatagccaaatagctgcaagctttgctggtttaggccacggtttaggttatgcc
aagctggttgacgcatgcttgcaagtcgaaatagataaaggtgagtcacgcacggattgg
atgaatcgtccgctttctgatgcacaattacagtatgcggctaatgatgtgttttacttg
tatcaattatacccacagctgcaacagaagcttgctgcagataatcgtgttgaatggttg
tttgaagaaggtcagcgtatgaccgaagggcgcatgtcattgccagcaggcgacagcgtc
taccttaaagttaaaaatgcgtttcaactatcgagtcagcagctagcctatttaaaagta
ttggctaaatggcgtttagccaaagcggtaagccgtaatcttgcgctaggttttgttgta
aaagaccatgcattaattgcattagccaaaaaacaaccaaccacattagcggaattgaat
agtttaaatgacttaacagatcaagagaaacgtattcacggcaaagatttattaacggtt
atggcgacggcagatttaattaatctccctgaagaagttgatgttgtggcgcttaagtct
ggttataaatcagcttttaaagaagtaaaaacagtcttaactgaattatgtgagcgtgaa
aacgtcgcattagaatttgttggttctaaacgccatattcatgaatttctattatggtta
taccataacaagcaaacaccaacaccgatactcttggttggttggcgtgggcagttggta
ggtgatttactagagccagttcgctttagttaa
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