Shewanella frigidimarina: Sfri_1924
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Entry
Sfri_1924 CDS
T00395
Name
(GenBank) ATP-dependent DNA helicase, RecQ family protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sfr
Shewanella frigidimarina
Pathway
sfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sfri_1924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfr03019
]
Sfri_1924
03400 DNA repair and recombination proteins [BR:
sfr03400
]
Sfri_1924
Enzymes [BR:
sfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sfri_1924
Messenger RNA biogenesis [BR:
sfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sfri_1924
DNA repair and recombination proteins [BR:
sfr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Sfri_1924
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
RecQ_Zn_bind
SWI2_SNF2
AAA_22
Cas3-like_C_2
DUF6044
Motif
Other DBs
NCBI-ProteinID:
ABI71770
UniProt:
Q082P5
LinkDB
All DBs
Position
2278417..2280426
Genome browser
AA seq
669 aa
AA seq
DB search
MTPSPYSDAATSEAASKFFDQQTLYQLLQQQFGFTEFREGQQAVIETILAGHSALAIFPT
GSGKSLCYQFCAQQLPNLTLVISPLLALMKDQLAFLASKGIAAASIDSSLTYDQTQQVMR
DVRDQRTRILMVSVERFKNERFRQFLKSVPISLLVVDEAHCISEWGHNFRPDYLKIPQYC
QEFSIPQSLLLTATATEQVKLDMAKRFGLLAEQVIQTGFYRPNLDLSVVAVNQQQKLTQL
ALTVKHYTGAGIVYVTLQQTAEDVAAHLIRQGINAAAYHAGMEQTVRQHIQQQFMQNHIQ
VIVATIAFGMGIDKSDIRFVIHFDLPKSIENYSQEIGRAGRDGLLAHCVTLANLDGLNTV
ENFVYGDTPEADNIGQLLGIIASETENGRWEVQETPLSTACNIRSLPLKTLFVQLELLGV
IRPSYAYFAEFKYRFVEDQQAILSRFNDQRQQFLSQVFAHTQFKKVWGQLDFDSLYQQHG
CERQRVVAALDYLAEQNLIILETKKITQVYDVQQQALATPQQLQQLTQQLSQYFSENEHK
EIVRIGKLVDFFELDRCLSANLAHYFDDHSVPQECGHCSVCRGQIAVLSKQAVAPLPDSA
TVTTLLEPLMLVARAKSLPTPTIATQAKFLAGMIMPMFSRLKVKQLDGFGRFSAYRYQDI
LDTVKKVNS
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgactccctcaccatatagcgacgcagcaacttctgaagccgcttcaaagtttttcgat
caacagacgctatatcaattgttacagcaacaatttggttttactgagttcagagaaggc
caacaagcggttattgaaaccattttggcaggtcattctgcattagcgatatttcctacc
ggttcaggtaagtccttgtgttatcagttttgtgcccaacagttacccaatctaacctta
gttatttcgccgttgttggctttaatgaaagatcagctggcatttttagcgagtaaaggc
atcgccgcggccagtattgattcaagtttaacttatgatcaaacacaacaagtgatgcgt
gatgtacgagatcaacgtacgcgaattttgatggtatcagttgaacgttttaaaaatgaa
cgttttaggcaatttcttaaatcagtaccgatttcgttgctggtggttgatgaagcgcat
tgtatttcagaatgggggcacaatttcaggcctgattatttaaaaattccacaatattgc
caagaattttcaatccctcaaagtttgttattaaccgcaacggcaactgaacaagtaaaa
ctggatatggccaagcgttttggtttattagcggagcaggtaatacaaaccggtttttat
cgcccgaatttagatttgtcggttgtcgcggttaatcagcaacaaaagctcactcaactc
gcgcttaccgtaaaacactatactggtgctggcatagtgtatgtaactctacaacaaact
gctgaggacgttgctgcacacttaatccgtcaggggataaatgctgcagcgtaccatgca
ggtatggagcagacggttagacaacatattcaacaacaatttatgcagaatcacattcaa
gtgattgtggcgacgattgcttttggtatgggcattgataaatcagatattcgatttgtt
atccattttgatttaccaaagtcgattgaaaattacagccaagaaatcggtcgagcagga
cgtgatggtttgctagctcattgtgtgacgttagcaaatttagatggattaaatactgtt
gaaaattttgtttacggcgatacgccagaagcagataatataggtcaattattaggcatt
attgcatctgaaaccgaaaatggtcgctgggaggtacaagaaacgccattatctacagca
tgtaacattcgttcattgcctttgaaaacgttatttgtgcagttagaactattaggcgtg
atccgtccaagctatgcttattttgctgaatttaaatatcggtttgtggaagaccagcaa
gccatcctgagtcgatttaacgatcagcgccagcaattcttgagtcaggtatttgcccat
acacagtttaaaaaggtgtgggggcaactggattttgacagtttatatcaacaacatggt
tgtgaacgacaacgagttgttgcggcattagactatttagctgaacagaatttgataatt
cttgagacaaaaaaaatcactcaagtgtatgatgtacaacagcaggcattagcgacaccg
cagcaattacaacaattgacccagcaactcagtcaatattttagtgagaatgaacataaa
gagattgtgcggattggtaagctagtcgatttttttgaacttgatcgttgtttaagtgca
aatttagctcactattttgatgaccactcggtgccacaagaatgtggccactgcagcgtt
tgtcgtgggcaaattgccgtcttatccaaacaggctgtggctccgttaccagactcggcc
acagtgacaacattgctcgaaccgttaatgttagtggctcgagcaaaatcgttacccact
ccaaccattgctacgcaggctaaatttcttgctggtatgataatgccaatgtttagtcgt
ttgaaagttaaacaattagatggctttggacgttttagtgcttatcgatatcaagatatt
ctggatactgttaagaaggtaaattcatga
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