KEGG   Shewanella frigidimarina: Sfri_1956
Entry
Sfri_1956         CDS       T00395                                 
Name
(GenBank) type I site-specific deoxyribonuclease, HsdR family protein
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
sfr  Shewanella frigidimarina
Brite
KEGG Orthology (KO) [BR:sfr00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:sfr02048]
    Sfri_1956
Enzymes [BR:sfr01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     Sfri_1956
Prokaryotic defense system [BR:sfr02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   Sfri_1956
SSDB
Motif
Pfam: EcoR124_C T1R_D3-like SWI2_SNF2 HSDR_N ResIII DEAD HSDR_N_2 SNF2-rel_dom
Other DBs
NCBI-ProteinID: ABI71802
UniProt: Q082L3
LinkDB
Position
2321573..2324686
AA seq 1037 aa
MTTYKTVAESNNFIVLDKYVKNWQVAESFQSEGDLERELIQDLSNQGYEYLPALTTPDAM
LANVRKQLQALNKVQFTDAEWARFCEQYLNTPSDNILDKTRKVHSDYIFDFVFDDGHIEN
IYLFDKKTIARNKVQVIKQFEQTGSHANRYDVTILVNGLPLVQIELKKRGVAIREAFNQI
HRYSKESFNTENSLYKFLQLFVISNGTDTRYFANTTKRDKNSYDFTMNWAKSDNTLIKDL
KDFTATFFQKETLLEVILRYSVFDVSNTLLVMRPYQIAATERILWKIKSAFNAKDWAKPE
SGGYIWHTTGSGKTLTSFKAARLATDLDCIDKVFFVVDRKDLDYQTMKEYQRFSPDSVNG
SDSTAGLKSNLDKDDNKIVVTTIQKLNNLIKSESDLAIYNKQVVFIFDECHRSQFGEAQK
NLKKKFKKYYQFGFTGTPIFPENALGAETTGSVFGQQLHTYVITDAIRDEKVLKFKVDYN
DVRPQFKSIETEQDDKKLSAAENKKAFLHPMRIREISQYILSYFNQKTHRAYSGAKGFNA
MFAVSSVDAAKAYYETFKTLQAEAENGPTSKPLRIATIFSFAANEEQDAIGDILDESFEV
SAMNSSAKEFLSAAINDYNAMFKSNYGVDSNGFQNYYRDLAQRVKNQEIDLLIVVGMFLT
GFDAPTLNTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDLEQATIDAITLFGD
KNTKNVVLEKSYKEYMEGFNDIATGQARRGFVDIVKELQERFPNPENIEKEQDKKEFAKL
FGEYLKAENILQNYDEFAGLKALQSLDTSDEQAVEEFKSKYYLDDADIEAMQAIDMPSER
AIQDYRSTYNDTRDWLRRDKEGQDKDKSTVDWDDVVFEIDLLKSQEINLDYILELIFDHN
KKNKSKEGLIEEVRRMIRGSLGNRAKESLVVDFINQTNLDEINDKASIIDAFFKFAQAEQ
KREADAIIASEKLNIDAAKRYIASSLKREYASENGTALNEALPKLSPLNPQYRTQKQTVF
QKIAAFVEKFKGVGGQL
NT seq 3114 nt   +upstreamnt  +downstreamnt
atgacaacgtataaaacggttgctgaatccaataactttattgtgttagataaatacgtc
aaaaattggcaagtcgcagaaagctttcaaagtgaaggtgatttagaacgtgagctgatt
caggacctaagcaaccagggctatgagtatttacctgcgctaacgacacccgatgccatg
ctggcgaatgtgcgcaagcagctacaagcccttaataaggtccagtttaccgatgccgaa
tgggcgcgcttttgcgagcagtatctgaatacaccgagcgacaatattcttgataaaact
cgcaaggtgcacagcgactatatcttcgattttgtctttgatgatggccatatcgaaaac
atctacctgttcgacaagaagaccattgctcgtaacaaagtgcaggtcattaagcagttt
gagcaaacgggaagccatgccaaccgttacgatgtgacgattttggttaatggtttgcct
ttggtgcaaatcgagctgaaaaagcgtggtgtggcaatccgtgaggcgtttaaccaaata
catcgctacagcaaagaaagctttaatactgagaactctttgtacaagttcttgcagctg
tttgtgatctcgaatggcaccgacacgcgctattttgccaataccacgaagcgcgacaaa
aacagctacgactttacgatgaactgggcgaagtcagacaatacgctgatcaaggattta
aaagactttacggcgacttttttccagaaagagaccttacttgaagtgatcttgcgttac
tcggtgtttgacgtcagcaataccttacttgtaatgcgcccctaccagattgcggccact
gagcgcattttatggaagataaagagcgcgtttaacgctaaagactgggctaagcctgaa
agcgggggttacatttggcacaccacgggttcaggaaaaacactcaccagctttaaagcg
gcacgtttggccaccgatttagactgcatcgataaagtattttttgtggtggaccgaaaa
gacctcgactatcagaccatgaaagagtatcagcgcttctcacctgatagtgtgaacggt
tcagacagtaccgcagggcttaagagtaacctggataaagacgataacaagattgtcgtc
accacaatccaaaagctcaataacttaatcaaaagtgaaagcgatttagctatctacaac
aagcaggttgtctttatttttgatgagtgtcatcgaagccagtttggtgaagcgcagaaa
aacctgaagaagaaattcaaaaagtactaccagtttggatttaccggtacgccaattttc
cctgaaaatgccttgggtgctgaaaccacgggcagcgtgtttggtcagcagttgcacacg
tatgtgatcactgacgccattcgtgatgaaaaagtactcaagttcaaagtggactataac
gatgttcgtccgcaatttaagagcattgagactgagcaggatgataagaagcttagtgcg
gcggagaataagaaagccttcttacatccaatgcgcattcgtgaaatttcgcagtatatt
ctgagctattttaaccagaaaacgcatcgagcctattctggcgctaaagggtttaacgcc
atgtttgcggtcagtagtgttgatgcggcgaaagcgtactatgaaaccttcaaaacattg
caggccgaggctgagaatggacctacaagtaaacctctgcgcattgcaactatcttctca
tttgctgccaatgaagagcaggacgccattggtgatattttagatgagagctttgaagtc
agtgccatgaacagcagcgcgaaagagtttttgagcgccgcgattaacgattacaacgcc
atgtttaaatctaactatggcgtggacagtaatggttttcagaattattaccgtgacctt
gcccagcgagtgaagaatcaagaaatagatctactcatagtggttggtatgtttttaacg
ggctttgatgcgcctacgcttaacaccttgtttgttgataagaatttgcgctatcacggt
ttgatgcaggcgttttctcgcactaaccgcatttatgatgcaactaagacctttggcaat
attgttaccttccgtgatttggagcaggcaaccattgatgccatcaccttgtttggtgac
aaaaacaccaaaaacgtggtgttggagaagagctacaaagaatacatggaaggttttaac
gatattgctactggccaagcgcgtcgaggttttgttgatatcgtaaaagagctgcaagaa
cgctttccaaacccagaaaatattgaaaaagaacaagataaaaaggaatttgccaagctg
tttggtgaatacctcaaagcagaaaatattttacaaaactacgatgagtttgctggatta
aaagcgctgcaaagcttagataccagtgatgaacaagcggttgaagagttcaagtcaaag
tactatctggacgatgctgacatcgaggcaatgcaagctatcgatatgccaagcgagcgc
gctattcaagattatcgctctacctacaacgatacccgcgactggttgcgacgcgataaa
gaaggtcaggacaaagataagtcaacggtagactgggacgatgtggtctttgaaattgat
ttgcttaaatcgcaagaaatcaacctcgactacattcttgaactgatttttgatcacaat
aagaagaacaagagcaaagaaggcttgattgaagaagtccgccgtatgatccgcggtagc
cttggcaatagagcgaaagagagcttggtggttgattttattaaccagacaaacctagat
gagatcaatgacaaagccagcattatcgacgctttcttcaagttcgcccaggcggagcag
aagcgcgaagccgatgccatcattgcctctgaaaagctcaatatcgatgctgccaaacgc
tatattgcgtcatcactcaaacgtgagtacgcctctgaaaatggcactgcacttaatgag
gcgctgcccaaacttagcccattgaacccacagtaccgaacccagaagcaaacggttttt
cagaaaattgccgcttttgttgaaaagtttaaaggtgtgggtggtcagttgtag

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