Shewanella frigidimarina: Sfri_2180
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Entry
Sfri_2180 CDS
T00395
Name
(GenBank) Holliday junction DNA helicase RuvB
KO
K03551
holliday junction DNA helicase RuvB [EC:
5.6.2.4
]
Organism
sfr
Shewanella frigidimarina
Pathway
sfr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Sfri_2180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfr03400
]
Sfri_2180
Enzymes [BR:
sfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sfri_2180
DNA repair and recombination proteins [BR:
sfr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Sfri_2180
RecFOR pathway proteins
Sfri_2180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RuvB_N
AAA_lid_4
RuvB_C
AAA
AAA_5
AAA_16
TIP49
AAA_14
AAA_3
IstB_IS21
AAA_22
nSTAND3
Mg_chelatase
DUF815
Rad17
AAA_17
RNA_helicase
AAA_18
NTPase_1
NB-ARC
AAA_19
AAA_25
AAA_24
TsaE
ABC_tran
AAA_11
Sigma54_activ_2
AAA_33
Motif
Other DBs
NCBI-ProteinID:
ABI72026
UniProt:
Q081N9
LinkDB
All DBs
Position
complement(2606748..2607758)
Genome browser
AA seq
336 aa
AA seq
DB search
MIEADRLIQPQVQGQDELIDRAMRPKMLDEYTGQDDTRAQLKVFIQAAINRREALDHMLI
FGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEEGDVLFIDEIHRLSP
VVEEILYPAMEDYQLDIMIGDGPAARSIKLDLPPFTLIGATTRAGALTSPLRARFGIPLR
LEFYNVADLTTIVTRSANVMNLEIDEQGAIEIAKRSRGTPRIANRLLRRVRDYAEVKHDG
KVSQTVAEYALDLLDVDDQGFDYLDRKLLLAIIDKFMGGPVGLDNLAAAIGEDRETIEDV
LEPFLIQQGFIQRTPRGRIASQRAYDHFSLVRPEKA
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgattgaagctgatcgactaatccaaccgcaggtacaaggtcaagatgaactgattgat
cgtgctatgcgccctaaaatgttggatgagtataccggtcaagatgatactcgagctcag
cttaaggtttttattcaagccgcgataaatcgtcgtgaagccctcgatcacatgctgatt
tttggtcctccaggtttggggaaaacaacgttagccatgattgtggctaacgaaatgggc
gtgaatatcaaatccacttctggccctgtgcttgaaaaagcgggtgatttagcggcatta
ttaaccaatcttgaagaaggtgatgtgctgtttattgatgaaatccatcgcttaagccct
gtagtggaagaaattctttatccagcaatggaagattaccaactggatattatgattggt
gatggtccagccgcgcgttcaattaaattggatttgccgccatttactcttatcggcgcc
acgactcgtgctggtgcattaacctcgccattgcgggctcgttttggtattccattacgt
ttagagttttataacgtcgcagacttaaccacaattgtaactcgttcagccaacgtaatg
aaccttgagatagatgaacaaggggctattgaaattgctaagcgttcacgcggaactccg
cgaattgccaatcgattattacgtcgagtacgcgattatgccgaagtaaagcatgacggt
aaagtgtctcaaacagtggctgaatatgcattggatttattggatgtagatgaccaaggt
tttgattacttagaccgtaaattattattggccattattgataaatttatgggtggccct
gttggattagacaatctagcggcagccatcggtgaagaccgcgaaacaattgaagatgta
ttggagccttttttaattcaacaagggtttattcaacgcacgccaagagggcgtatcgct
tctcaaagagcctatgatcattttagtttggttagacctgaaaaagcttaa
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