Shewanella frigidimarina: Sfri_2712
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Entry
Sfri_2712 CDS
T00395
Name
(GenBank) Transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase / DNA-3-methyladenine glycosylase II
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
sfr
Shewanella frigidimarina
Pathway
sfr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Sfri_2712
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfr03000
]
Sfri_2712
03400 DNA repair and recombination proteins [BR:
sfr03400
]
Sfri_2712
Enzymes [BR:
sfr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
Sfri_2712
Transcription factors [BR:
sfr03000
]
Prokaryotic type
Helix-turn-helix
AraC family
Sfri_2712
DNA repair and recombination proteins [BR:
sfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Sfri_2712
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
Motif
Other DBs
NCBI-ProteinID:
ABI72552
UniProt:
Q07ZL2
LinkDB
All DBs
Position
complement(3257190..3258725)
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AA seq
511 aa
AA seq
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MVQINSDCNIAAQICQQARLSRDARFDGQFFTGVITTGIYCRSICPAPAPYEKNVRYFDS
AIKAANVGLRPCLRCRPDSAPSSFAWLGTQTTLMRAITLIEQGYLTGENAGTIVKLADKL
GITSRYLNKLFNQGLGTSPKRFALYQQLMFAKQLLHQTQLSMTEVAMAAGFNSIRRFNEI
FKQELLLTPSELRQKSRHSTDVTHPYKDNQVSTNIKPITLALSYRPPFNWAKMLAFYAFR
QVDNMEVIDDISGRYGRTFSFNGVEGVFYISPNADKPQLDVSIYLADANDIKSLHYITLQ
LRRMFDLDADMEVIQQALSPIIKLGAKIDSGLRIPAAGSVFEAACRAVLGQQVSVVQATK
LLNLLVESYGETLFIDGKTWQLFPTAQAIANASLDELKMPGARKLALNALGQFVHQHADS
TPDDWLSVKGIGPWTVAYANMRGLSDPDVFLSSDLVIKNRLHALYEQSGIPIETPKSYIS
IAADIATQASPWGSYLTFQLWDNDPVAAKNG
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atggtccagattaacagtgattgtaatattgcagcacagatctgccagcaagcaaggctt
agtcgtgatgctcgctttgatggtcaattttttaccggagttatcactactggtatttat
tgccgatcaatttgtcccgctcctgcaccctatgaaaaaaatgtccgttactttgattct
gcgattaaagcggctaatgtcggacttaggccttgtcttcgatgccggccagatagtgcg
ccaagttcatttgcgtggttaggtactcaaactacgttaatgcgagcgattacgttaatt
gagcaaggctatttaactggtgagaatgcagggacgatcgttaaattagctgataagtta
ggcattaccagtcggtatttaaataaactctttaaccaaggtttggggacttcgcctaaa
cgttttgcgttatatcagcaattgatgtttgctaagcagttattacaccaaacacaatta
tcaatgaccgaggtcgccatggctgctggctttaatagtatcaggcggtttaatgaaatt
tttaagcaagaactattgttaacacctagcgaattacgccaaaagagccgacattcaact
gatgtaactcatccttataaagataatcaagtgagcactaacattaaaccaataacatta
gcattatcttaccgtcccccctttaattgggcgaagatgttggctttttatgcatttcgt
caagttgataatatggaagtcattgatgatatttcgggacggtatggccgaaccttttcg
tttaatggcgtagaaggtgttttttacatttcaccaaatgccgataaaccccaacttgat
gtgagtatttacttagctgatgctaatgatattaagtccttgcattatattactctgcaa
ttacgccgtatgtttgatttagatgctgacatggaagtcattcagcaagctttatctccc
atcattaaattaggcgccaaaattgatagtggtttacgtataccagcggctggcagcgtt
tttgaggccgcttgccgtgccgtattagggcaacaagtcagtgtagtgcaagccactaaa
ctattaaatttattggttgaatcttatggtgaaacgctgttcatcgatggtaagacttgg
cagttatttcctacggcacaagctattgctaacgcttcattagatgaacttaaaatgcca
ggagctcgaaaattagccttaaatgccttggggcaatttgtgcatcagcatgctgactca
acacctgacgattggttgtctgtaaaaggtattggtccatggactgttgcttatgcgaat
atgcgaggtttgagtgatcctgatgtgtttttgagttctgatttagttatcaaaaatcgt
cttcatgcattatatgagcaatcgggtatacccattgaaacccctaaatcgtacataagc
attgctgccgacattgcaacacaagcatcaccttggggcagttacttaaccttccagctt
tgggataacgatcctgtcgctgcaaaaaacggataa
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